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15-0608-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 43248 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -51; Region: promoter
    Flanking Genome Sequence: 15-0608-1 - 5-prime edge 
    TTTATACATA CCATTTTCCA TTTTCATCTT TTCTTATTTC TCAATATATA 
    TATTCTTTTT CCAGAAATAT ACACATATGT ATTTACTGAT ATATATCTTT 
    GACTCGATTA ATTAACCGAA TGCTTACATG CATGTCTCTT ATTATTTACT 
    TCATATGCCT CATTTTTTTT TTTANGGGAN ATNNGNCNNA TTTNANNANA 
    NNTTNNNCCT TTCCNTTTNG GNTAAAANAA ANAANNGGTT NGGAAAATTN 
    ATNNGAAAAT TTAANGGGNN TTAAANATTG GGGGNNNATT NANNTNNTTA 
    AAAANAANGG NTNNANNANG GGGGGCGGGG NTNAAAANAA ANGGATNTNG 
    GGGGGGNAAA AAAAANAANC TTNTAAANNG GGGNGTTNAA ANNAAAAAAA 
    ACNTCNAAAA AANCCCNTNT NGGNNNGGAN NNNNCNTNTT CCCNNNGNAA 
    AANGGCCCNG NANAAAAAAA AGGGNACNTT NGAAANGGGT TTNGNNCCCC 
    CCCCAAANNT TNGNTTTTTT NTGGGGNNNG NTNNNNAACC GGGGNNGGNA 
    AANNNCCGGG NCCNTNNNNG G

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 43132 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-0608-1 - 3-prime edge 
    TGTATAAAAA GAAAGGAGTG TGCGACTCTT GTGTCTCGTC CAAAAGCAGA 
    TCCAACCACA GCCCCAAAAG AAGCATGATG GAGCCTCAGC CTCACCATCT 
    CCTCATGGAT TGGAACAAAG CTAATGATCT TCTCACACAA GAACACGCAG 
    CTTTTCTCAA TGATCCTCAC CATCTCATGT TAGATCCACC TCCCGAAACC 
    CTAATTCACT TGGACGAAGA CGAAGAGTAC GATGAAGACA TGGATGCGAT 
    GAAGGAGATG CAGTATATGA TCGCCGTCAT GCAGCCCGTA GACATCGACC 
    CTGCCACGGT CCCTAAGCCG AACCGCCGTA ACGTAAGGAT AAGCGACGAT 
    CCTCAGACGG TGGTTGCTCG TCGGCGTCGG GAAAGGATCA GCGAGAAGAT 
    CCGAATT

AT4G00120.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
INDEHISCENT (IND); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G09750.1); Has 2280 Blast hits to 2276 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR