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15-0726-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12044478 [Map]; Strand: w
      • AT1G33200.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G33220.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: -394; Region: promoter
    Flanking Genome Sequence: 15-0726-1 - 5-prime edge 
    CACACGGCCA CGCTNNNCNT NNAAACTTCT CTAAAGTCTC CTCTGTTTTT 
    GTACCTTCTG CTTTNGCAAT TTCAGCTTTT GTATCCTCTG TTTTTCTTTT 
    AAAACACGTC AACACACAGG TTGCATTCAT TGTACAAAGG ATTTTGATTG 
    AATAAAATTT TACATTCTTT CAAAAAAAGA AAAAAAAGNG TANATAAATA 
    TAACTAGTGA AAAAAGAAAA AACCGAATTT GTAAATAGAT CGACGGCTAA 
    NATTACACTC ATTAGTAACT AAGTNNTATA TCGNAAATTT CANGTGAAAG 
    TNGGTCCAAG AAATGGTAAC AATTGGNGAA GTTCATNAAC CTTGCGTGAG 
    CAAANAAAGG GATGTGAAAA AGGGGTNNAA AGGCACACAC ATGTCGGANT 
    GGAACCTAAT TCTGTANTCA ATAAAGGGAA ATCNTCGTTA CAANAAATTN 
    CANATGCCAA TANGACCNTC CAATTNANNN TTGGANATCT ATGGCCATAC 
    ANGTNTTNAA ATTTNATNGG ANNGGGGAGN NNNTCNTGCA TTATTTNGGA 
    TCGTAGTNAA NTTGTCCAGA AANTANCGAT ATNTCAGNNN NGGAATTCAG 
    GGNNNNNGGG AATCCNGAGG NTGANGNNNG ANANTNGGAA GAACCTTNNN 
    CNCNGNGNTG GACTANGGGG NNAGANANCA NACATNCAAT GNNNTTCTGC 
    GGGANNNACA ATTGGAGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12044362 [Map]; Strand: w
      • AT1G33200.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G33220.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: -510; Region: promoter
    Flanking Genome Sequence: 15-0726-1 - 3-prime edge 
    GCCGTGTGGA GAACCATAAC TGCAGGCATG TGTTGTAGCT ATGGTTTCCG 
    GTGTCTCGTA TTGAACTGAT TCTATTGCGG ACAGTCTTAT CAATGAGCTT 
    GATGAGCCTG TTTGATGGTG AGCTGAGTTC CCCATGACAT CTTGCATTTC 
    TCTCTCGCCA AATATGGGAG ATGGAAGCT

AT1G33200.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to SAE1-S9-protein, blastp match of 28% identity and 4.2e-16 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa}
Link
InterPro Scan - TAIR

AT1G33220.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 5 (TAIR:AT5G20340.1); Has 2095 Blast hits to 2083 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2086; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR