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15-0728-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17923386 [Map]; Strand: w
      • AT4G38210.1 - [+] show detail - expansin A20
        Distance: 0; Region: exon2 (CDS)
      • AT4G38215.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 15-0728-1 - 5-prime edge
    CTGGTTTCTG CGATCCCTGT GAAGGCGGCA TGAGATAGTT CCAAGTGTTC 
    CTTTGGGAAG TTGCACCAAC CTCCGTAATC GGAGGAGAGT CCCGAATTGG
    GAGGACAGAA ATCGGTGGCG GTGACCACCA CGGAGGGGCT GCCTTGAAGA
    CACCAACGGA TGTGGTTCAC GCACCGCACT TCTAGACAAG CTCCGCAGCT
    GCTTCCCCTG TTGAACAGCT TCCCGCTCAG GCCTGCGCTG TAGCCGGCAA
    AGCTGCTCTG CCTCAGATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17923270 [Map]; Strand: w
      • AT4G38210.1 - [+] show detail - expansin A20
        Distance: 0; Region: exon2 (CDS)
      • AT4G38215.1 - [+] show detail - other RNA
        Distance: -62; Region: promoter
    Flanking Genome Sequence: 15-0728-1 - 3-prime edge
    GAAACCAGCA GCTGAGATGA TACCTATACA NTATANGAGG GTCAAGTGTG 
    GGCGGAGAGG CGGGTTGAGA TTCAGCTTGA GCGGGAGCTC CCACTTTTTC
    CAGGTGTTGA TAAGCAATGT GGGCCTCGAC GGGGAAGTGN TTGGNGNGAA
    NGTGAANGNC CACACAACGG CTTGGATCCC AATGGCCACA AACTGGGGAC
    AGAACTGGCA CTCCTCTCTC GATCTCATCG GACAGTCTCT CTCTTTCGAG
    GTTACTCTCA AAGGCGGCAA AACCATTGCC TCTTATGATG TGGCTCCTCC
    GTATTGGCGC TTCGGAATGA CATACCAAGG AAAGCAGTTC CACTCCTGAC
    TCCTTTATCT TCTTCAAATC ATGATTCACT TTCGGTGACT TTATTATGAC
    TTTGGAGTCA TTAGATATCA TCACTTCATT TCAAGGAGGT ATAAATGACT
    TTCCACGANT GGCTCATCTT TGTCTTCTCT TTTCTTTTTT CTTTTTATAT
    AATATATCCT TCACAATCCT TACTTGGACC GCATTTANCT GTGTGAGAGT
    ATATTATGCA CATTGATCAC GACTGGAAGG AANAAAATAN GCNTTGCANA
    CAAAATGCAA TGACCCTCCT AATCTCACCA TTCTTTTCTT ANTTTCTACN
    AACAGNANTC ANTTACTTTA TATCANCACT ATCAATCAAC ANCACAAANC
    CTGNNAATCT CNCNTNTNCN NCNANAAAA

AT4G38210.1

Model type
Protein coding
Short Description
expansin A20
Curator Summary
expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A20 (EXPA20); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, response to karrikin, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A9 (TAIR:AT5G02260.1); Has 2080 Blast hits to 2077 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 2051; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38215.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G38210
Link
InterPro Scan - TAIR