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15-0747-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13863964 [Map]; Strand: c
      • AT2G32690.1 - [+] show detail - glycine-rich protein 23
        Distance: 0; Region: exon1 (CDS)
      • AT2G32690.2 - [+] show detail - glycine-rich protein 23
        Distance: 0; Region: exon2 (CDS)
      • AT2G32690.3 - [+] show detail - glycine-rich protein 23
        Distance: 0; Region: exon2 (CDS)
      • AT2G32690.4 - [+] show detail - glycine-rich protein 23
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-0747-1 - 5-prime edge 
    GGGGGAGGAG GATTCGGGGG CGGAGCCGGT GGTGGATTTG GTAAAGGCAT 
    TGGTGGTGGA GGAGGTCTTG GAGGAGGTTA TGTTGGTGGT GGCCATCACT 
    GATGAGTGGT GAGGCTCATG CTCATGCATT CGTAACNGTT GTTATATTAT 
    TTAATTAAAT GGAAAATGAT AAATTAATTA TTGCAATAAA ATGATACATT 
    AGCAATTGTG TATGTCGTTA TTTTTATTTT GAGTCGCATT GTATGCTGAT 
    TCCATATGTT CGGCTTTGGT CGGTTTCAAG TGTGGTTAAT AAAATGGTTA 
    TTTTACTTTT GCCAACAGTT ATTGAGTGGT TGTGTTTATG TTTTATATAC 
    ATGTTCACTC ATCTTTCCAT ATGATCTTAC AACACTTGCT AAAATGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17923274 [Map]; Strand: w
      • AT4G38210.1 - [+] show detail - expansin A20
        Distance: 0; Region: exon2 (CDS)
      • AT4G38215.1 - [+] show detail - other RNA
        Distance: -58; Region: promoter
    Flanking Genome Sequence: 15-0747-1 - 3-prime edge 
    GCGNGACCNG GTCGCACGAG ATCATNTNCA CCGNGCCAGG GANCAACGCG 
    TGNNCCTNNA AGGCGGGTTG AGATTCAGCT TGAGCGGGAG CGTCCCACTT 
    TTTCCANGTG TTGATAAGCA ATGTGGGCCT CNACGGGGAA GTGGTTGGTG 
    TGAAAGTGAA GGGCCACACA ACGGCTTGGA TC

AT2G32690.1

Model type
Protein coding
Short Description
glycine-rich protein 23
Curator Summary
Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.
Computational Description
glycine-rich protein 23 (GRP23); INVOLVED IN: response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 303868 Blast hits to 48327 proteins in 2515 species: Archae - 737; Bacteria - 85902; Metazoa - 108780; Fungi - 19861; Plants - 26862; Viruses - 4169; Other Eukaryotes - 57557 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G32690.2

Model type
Protein coding
Short Description
glycine-rich protein 23
Curator Summary
Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.
Computational Description
glycine-rich protein 23 (GRP23); INVOLVED IN: response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 539 Blast hits to 528 proteins in 135 species: Archae - 0; Bacteria - 118; Metazoa - 258; Fungi - 39; Plants - 80; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G32690.3

Model type
Protein coding
Short Description
glycine-rich protein 23
Curator Summary
Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.
Computational Description
glycine-rich protein 23 (GRP23); INVOLVED IN: response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 532 Blast hits to 521 proteins in 137 species: Archae - 0; Bacteria - 120; Metazoa - 251; Fungi - 39; Plants - 79; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G32690.4

Model type
Protein coding
Short Description
glycine-rich protein 23
Curator Summary
Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.
Computational Description
glycine-rich protein 23 (GRP23); INVOLVED IN: response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 494 Blast hits to 482 proteins in 134 species: Archae - 0; Bacteria - 114; Metazoa - 221; Fungi - 41; Plants - 79; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38210.1

Model type
Protein coding
Short Description
expansin A20
Curator Summary
expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A20 (EXPA20); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, response to karrikin, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A9 (TAIR:AT5G02260.1); Has 2080 Blast hits to 2077 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 2051; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38215.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G38210
Link
InterPro Scan - TAIR