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15-0787-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
stem (PO:0009047)
  • decreased length (PATO:0000574)
    (Branching::short internode)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7888451 [Map]; Strand: w
      • AT1G22330.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 15-0787-1 - 3-prime edge 
    GCTGCTGCTG ATGATGGTGA TATTGATAAT GTTGTTGATG ATGAAGATAT 
    GGTCTAGGGC TTGGAGCTTG GAGGTAGTAA TAAGGGGAAG GCATGATGTT 
    GGATGATGAT GGTGATGTTG CTCCTCCTCC TCCGTACATT TGCNTGTTGA 
    TAGTATTGTG CCTGTTGGAG CTGTGCGTTG TATAGGGCCT GCATGTAACN 
    TTATGTTTGA TTAATATCAT CACCAACCTC ATCATCTTGA GTTCATTTTT 
    TATGATCTAC CCCTATTTCT TCTACGTCAT TAACATATAA TTTCCTACGT 
    CATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7888567 [Map]; Strand: w
      • AT1G22330.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 15-0787-1 - 5-prime edge 
    GCAGCAGCAG CAACAACAAC AACAACGTTT ACCTTCTGCT TCATCTTACC 
    TAATTTACCC ATCCAATGTC GAGGCTCCTA CTCCATCTAA TGTCCCTACT 
    TCCCAAGGGC CACTATCTTC TTCCACTGGT AAGTCTTATA ACCACCATGC 
    ATGTCCATTG TACAAATTGC ATTAATCATC ATAACAAGAT TCACGACCAC 
    TAAGTACTAA ACAATAAGTT TTGTAAGAAA CAAGAGCTAG TGAGATTGAA 
    TTATATAGTA CGGAAGATTA AATGGAATAC CAAAAAAGAG TGAATGATTG 
    GGCACATGGG ATATATATAA TTGCGTCATA TCCATGTGAA CTGAGCTGTC 
    TAAATTTTTT CTCCTCACAT CTGTCTATCC TCCATCATGG GTCATGCATG 
    TTTATATATG TGTATGTAAA ATGCATAAAC CAATAGTGTT TGCATGTGAG 
    TTCTGTCACC TTTTTATATT ATTGATTCTC AAGATCTAGT CACACAACTC 
    ACAAGGGACC ACTCTCTATT TAAGCAATTA TCCAAACTTA TTTGTAGAGG 
    GGCCACCAAA CAAATAACTT CTATGTGTGG ATTGACTATA TATTTATGTT 
    AAAAAAGGTT TTACNATATG AATCTTTTTT TCTCTTNANA ATCACACNCN 
    CCNNNNCNNG TNTNANAANA AGGGGGANAA TTACCANNNN GGGCCGNNNA 
    CCACCCG

AT1G22330.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G78260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR