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15-0810-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Fruits (Siliques)::abnormal shape)

seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::semi-sterile)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2682285 [Map]; Strand: w
      • AT4G05200.1 - [+] show detail - cysteine-rich RLK (RECEPTOR-like protein kinase) 25
        Distance: 0; Region: exon1 (CDS)
      • AT4G05210.1 - [+] show detail - Trimeric LpxA-like enzymes superfamily protein
        Distance: -582; Region: promoter
    Flanking Genome Sequence: 15-0810-2 - 5-prime edge
    GTGGTAGAGA TAAGTTGGAT CTGAAGTAAC TGTCTTCAAG ATCATAAACA 
    AGAAAACTGA GAACAGAGAA ACAGAGGATT TGAAACAAGA AGACATGTTT
    TTGTTTTCTT TGCTCTTCTT CTTCTTTGAG TTTCTTAATA TAATCTTCAT
    TGGAATTAGT GGGATTCAAA GTCTAATTAC TACAGTTAGT CATTGATAAT
    TAAGATTGTT TAAATCAAAT TATTATGTTC AAACTTCAAT ATTCCATAGG
    TTAGGCAGGC CTGTCTAGAT AATGAAATTA AAATGTGCTG TTGTAATCAT
    TGACATAATA ATATGATTAA AAAACATATT TGGTCAAAGG TTTCGGGGAA
    TCATAAAATT TATAAATTCA TCAAAATTGT TTTTTTTTGT CATCAAATTT
    TATTTANAAC TCATAATAGC CAATCCTGAG TAACATTGTT TACAAAAGTG
    ATATGAAGCG GTTTCAANAT TGTTTGTTGA GTATAAAATA TTACATGGAA
    ATGTTGATTT TTTAGTTCTA ATTTGTTTTG TTAAAANAAA NAGTTTAAAG
    CT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2682169 [Map]; Strand: w
      • AT4G05200.1 - [+] show detail - cysteine-rich RLK (RECEPTOR-like protein kinase) 25
        Distance: 0; Region: exon1 (CDS)
      • AT4G05210.1 - [+] show detail - Trimeric LpxA-like enzymes superfamily protein
        Distance: -698; Region: promoter
    Flanking Genome Sequence: 15-0810-2 - 3-prime edge
    TCTACCACAT ATGTCCAAAC ACAACAACGT ACTCAAGAAA CAGCAGTTAC 
    TTAACCAATC TCCGAACTGT TCTTTCATCT CTCTCCTCTC CAAACGCAGC
    TTATGCATCG CTTTTTGATA ACGCAGCCGC TGGTGAAGAG AACGATAGCA
    ACAGAGTATA TGGTGTTTTT CTCTGCCGTG GAGATGTCTC AGCCGAAATC
    TGCCGTGACT GTGTCGCGTT TGCAGCCAAC GAAACGCTCC AAAGGTGTCC
    AAGAGAGAAA GTGGCAGTGA TTTGGTACGA TGAGTGTATG GTAAGATACT
    CTAATCAAAG CATCGTAGGG CAAATGAGAA TTAGACCTGG TGTTTTCTTG
    ACGAACAAGC AAAACATCAC AGAGAATCAA GTGAGCAGAT TCAACGAGTC
    TTTGCCTGCT CTGCTCATAG ATGTTGCGGT GAAAGCCGCT TTGAGCTCGA
    GAAAGTTCGC TACGGAGAAA GCCAATTTCA CGGTTTTTCA GACAATCTAT
    AGCCTTGTGC AGTGCACTCC GGATTTGACT AATCAAGATT GTGAGAGCTG
    TTTGAGACAA GTCATTAATT ACTTGCCGAG ATGTTGTGAT CGAAGCGTTG
    GCGGGAGAGT AATCGCTCCG AGTTGTAGCT TCAGATATGA GCTTTATCCA
    TTTTACAATG AAACTATAGC TGCGGCTCCG ATGGCTCCTC CTCCTTCGTC
    AACGGTGGCT GCACCACCAC TGAATATTCC TTCANAAAAA GGTTAAAAAT
    CTTGAAACTC ATAN

AT4G05200.1

Model type
Protein coding
Short Description
cysteine-rich RLK (RECEPTOR-like protein kinase) 25
Curator Summary
Encodes a cysteine-rich receptor-like protein kinase.
Computational Description
cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (CRK25); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (TAIR:AT4G23180.1); Has 124291 Blast hits to 122724 proteins in 4390 species: Archae - 112; Bacteria - 13863; Metazoa - 45275; Fungi - 10764; Plants - 35367; Viruses - 449; Other Eukaryotes - 18461 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G05210.1

Model type
Protein coding
Short Description
Trimeric LpxA-like enzymes superfamily protein
Computational Description
Trimeric LpxA-like enzymes superfamily protein; FUNCTIONS IN: transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Hexapeptide transferase, conserved site (InterPro:IPR018357), Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzymes superfamily protein (TAIR:AT4G21220.1); Has 11511 Blast hits to 11440 proteins in 1956 species: Archae - 52; Bacteria - 7646; Metazoa - 8; Fungi - 29; Plants - 63; Viruses - 3; Other Eukaryotes - 3710 (source: NCBI BLink).
Link
InterPro Scan - TAIR