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15-0825-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 68183 [Map]; Strand: c
      • AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
        Distance: 2704; Region: intergenic
      • AT4G00165.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 1090; Region: intergenic
    Flanking Genome Sequence: 15-0825-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    CACACCCAAC CCTACTCAAT CGGATAGTTA GGAGAAAATT TACATTATTA
    TACAACCTTT ATAAAATGAA GAAGATTTCA GCTAATTTGT TCTCCTAAAT
    CGGGGTTTGT ATGATGAACA GAATCGTGCT TTGCCATAAT TAGAGGAAGA
    AACAAAAAAG TCAGCTAAAT ATATTAATCT TGTCAAACAA TAATTTATAT
    TGAAGGATGA CGTGTTAGAG TTTGTATGCA TGTACCATAT ATAAATGATT
    GCGTCGNTCA TTTGGATTAN ATTTTAGGAT ATGATAGTNG ATTANCCAAA
    ATGNTCATTT TTTTTGGGAA TCCCTGGGCT GGTGGGGTAN GAAAACCGGA
    AAATTTTTNT TNTTTTAGNC CCNGTTTTTT TTTTTNTTAA AANCCCCCCN
    ATGGGGGGGG TNTACCCTTC CCCNNTAANG GGGGGNNGGN TTNNNTTTTA
    AAAAAAACCN TTTTNAAAAA NNANCCNCNT TTNNNNNNCN CCCTTTTTTT
    TTTTTTTNNC GGNCNNANNA AAANAAAANN GGGGGGNNNN NNNNTCNCNN
    NNNNNCT
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4011225 [Map]; Strand: c
      • AT1G11880.1 - [+] show detail - transferases, transferring hexosyl groups
        Distance: -792; Region: promoter
      • AT1G11890.1 - [+] show detail - Synaptobrevin family protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 15-0825-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTGACAACAC GACGACTAGT GAAACCAAAA TTAGCCACAA
    ACAATACACA GATCTCAAAA TCTAAGCGAG TATACTAATC ATATCATACA
    ATCATCGAGA TTCAAAATCG AAGAACATGA AATTCGGTAA CAAAACTCTC
    ACCTAACTGC TCAGAAAACG ATTTATGAAC GTTCTCAAAA CGATTCATAA
    CAATAGATCA AACGGAAAAT CGATCCAAGA GCTACACAGT AAGGTAATAT
    CTTCAGAACG TTCTCAAAGT TCCGATCCCA AAATGAAGCA AATCTCATAC
    AAAATTGAAC AAAATTCTCC ATTGTATACA GATGTAAAAC GTAAAATTAG
    AATTGAGCAT GGATTTAGAC AAACCTGAAA TGAGCTTTAA AATTGCTTCT
    TCTCGATTCA AAGATCTGAG AACCAGAGGA NGACGATGAT CGAANGAGNG
    ANAAGTAATT TTTTTTTTTT TNAAANNAAG GGGNTTATNA AANAAGGGGG
    CNAAANTNTN ATTAANGGNT TCCTTTTTTT TTTTTGGGGG GGNCAAAATT
    NATTTTTNNA NAATTTCCNT TTNGGNNTNA CCACCCCNCN CGGNATGGGG
    NTTNNAACCC NTTTNGNGNA CNTGTTTNGN NNANGGGNCC CNTTNNNTTN
    NTTNNAAANC CCCNCNTTNN CCTNAGGGNT TTNAAANNGG GNTGGNNCCN
    NANAANGGNT TTTTNNGNCC CNANNAANCN GNAANNTTGG GNTAANCCNG
    GNNNTTTCCT TTT

AT1G11880.1

Model type
Protein coding
Short Description
transferases, transferring hexosyl groups
Computational Description
transferases, transferring hexosyl groups; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mannosyltransferase, PIG-V (InterPro:IPR007315); Has 490 Blast hits to 469 proteins in 237 species: Archae - 6; Bacteria - 111; Metazoa - 123; Fungi - 146; Plants - 40; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11890.1

Model type
Protein coding
Short Description
Synaptobrevin family protein
Curator Summary
member of SEC22 Gene Family
Computational Description
SECRETION 22 (SEC22); FUNCTIONS IN: transporter activity; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G52270.1); Has 1577 Blast hits to 1577 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 342; Plants - 449; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00160.1

Model type
Protein coding
Short Description
F-box/RNI-like/FBD-like domains-containing protein
Computational Description
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00165.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: N-terminal protein myristoylation, lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G45180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR