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Mutant Lines
15-0825-1

15-0825-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 4; Position: 68183 [Map]; Strand: c
- AT4G00160.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
  Distance: 2704; Region: intergenic
- AT4G00165.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
  Distance: 1090; Region: intergenic

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
CACACCCAAC CCTACTCAAT CGGATAGTTA GGAGAAAATT TACATTATTA 
TACAACCTTT ATAAAATGAA GAAGATTTCA GCTAATTTGT TCTCCTAAAT 
CGGGGTTTGT ATGATGAACA GAATCGTGCT TTGCCATAAT TAGAGGAAGA 
AACAAAAAAG TCAGCTAAAT ATATTAATCT TGTCAAACAA TAATTTATAT 
TGAAGGATGA CGTGTTAGAG TTTGTATGCA TGTACCATAT ATAAATGATT 
GCGTCGNTCA TTTGGATTAN ATTTTAGGAT ATGATAGTNG ATTANCCAAA 
ATGNTCATTT TTTTTGGGAA TCCCTGGGCT GGTGGGGTAN GAAAACCGGA 
AAATTTTTNT TNTTTTAGNC CCNGTTTTTT TTTTTNTTAA AANCCCCCCN 
ATGGGGGGGG TNTACCCTTC CCCNNTAANG GGGGGNNGGN TTNNNTTTTA 
AAAAAAACCN TTTTNAAAAA NNANCCNCNT TTNNNNNNCN CCCTTTTTTT 
TTTTTTTNNC GGNCNNANNA AAANAAAANN GGGGGGNNNN NNNNTCNCNN 
NNNNNCT

5 prime edge [+] show sequence

Chromosome: 1; Position: 4011225 [Map]; Strand: c
- AT1G11880.1 - [+] show detail - transferases, transferring hexosyl groups
  Distance: -792; Region: promoter
- AT1G11890.1 - [+] show detail - Synaptobrevin family protein
  Distance: 0; Region: intron1 (5UTR)

GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTGACAACAC GACGACTAGT GAAACCAAAA TTAGCCACAA 
ACAATACACA GATCTCAAAA TCTAAGCGAG TATACTAATC ATATCATACA 
ATCATCGAGA TTCAAAATCG AAGAACATGA AATTCGGTAA CAAAACTCTC 
ACCTAACTGC TCAGAAAACG ATTTATGAAC GTTCTCAAAA CGATTCATAA 
CAATAGATCA AACGGAAAAT CGATCCAAGA GCTACACAGT AAGGTAATAT 
CTTCAGAACG TTCTCAAAGT TCCGATCCCA AAATGAAGCA AATCTCATAC 
AAAATTGAAC AAAATTCTCC ATTGTATACA GATGTAAAAC GTAAAATTAG 
AATTGAGCAT GGATTTAGAC AAACCTGAAA TGAGCTTTAA AATTGCTTCT 
TCTCGATTCA AAGATCTGAG AACCAGAGGA NGACGATGAT CGAANGAGNG 
ANAAGTAATT TTTTTTTTTT TNAAANNAAG GGGNTTATNA AANAAGGGGG 
CNAAANTNTN ATTAANGGNT TCCTTTTTTT TTTTTGGGGG GGNCAAAATT 
NATTTTTNNA NAATTTCCNT TTNGGNNTNA CCACCCCNCN CGGNATGGGG 
NTTNNAACCC NTTTNGNGNA CNTGTTTNGN NNANGGGNCC CNTTNNNTTN 
NTTNNAAANC CCCNCNTTNN CCTNAGGGNT TTNAAANNGG GNTGGNNCCN 
NANAANGGNT TTTTNNGNCC CNANNAANCN GNAANNTTGG GNTAANCCNG 
GNNNTTTCCT TTT

AT1G11880.1

Model type: Protein coding
Short Description: transferases, transferring hexosyl groups
Computational Description: transferases, transferring hexosyl groups; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mannosyltransferase, PIG-V (InterPro:IPR007315); Has 490 Blast hits to 469 proteins in 237 species: Archae - 6; Bacteria - 111; Metazoa - 123; Fungi - 146; Plants - 40; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G11890.1

Model type: Protein coding
Short Description: Synaptobrevin family protein
Curator Summary: member of SEC22 Gene Family
Computational Description: SECRETION 22 (SEC22); FUNCTIONS IN: transporter activity; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G52270.1); Has 1577 Blast hits to 1577 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 342; Plants - 449; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00160.1

Model type: Protein coding
Short Description: F-box/RNI-like/FBD-like domains-containing protein
Computational Description: F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 2232 Blast hits to 2187 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00165.1

Model type: Protein coding
Short Description: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: N-terminal protein myristoylation, lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G45180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR