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Mutant Lines
15-0920-1

15-0920-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 17861286 [Map]; Strand: w
- AT4G38010.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
  Distance: -25; Region: promoter
- AT4G38020.1 - [+] show detail - tRNA/rRNA methyltransferase (SpoU) family protein
  Distance: -237; Region: promoter

CATCGGCTGA TCAATTCCAG AAGAACTGAT TTCTCCGGCA AATACATCTA 
GTCGCAAATA GTGATCAAAC AATCACATGG GGGTTCTATG TTAATCTGCA 
TTTGTAGAAC GAGTTCGATT CACAGAAAGA ACCAAATTTG CAGATTCATA 
GACGGAGAAG AAGCGGAAGA CTGAAACAGA GAGCTAACCT GAGGATGACG 
AAGAGGGTTT ACCGTTAAAA CCACTTATTG GGCCTATTAT TGGGCCTATC 
TTTTTAACAG ATTGGGCTTT TCTATAAAAT TCTTAGACCT CTCTAGACTC 
TAGGCTTCAC CGGAGAAAGA AGAGAAATCA ATCGGATTAG TTGCAGAAGT 
GCAATGCATT GCGGATGTGT ATTCGCTTCA CAAACTGTGT CATCACTTCT 
CCCATTTGAA ATTAAAACCT ATGCGTCAAA GCT

3 prime edge [+] show sequence

Chromosome: 4; Position: 17861170 [Map]; Strand: w
- AT4G38010.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT4G38020.1 - [+] show detail - tRNA/rRNA methyltransferase (SpoU) family protein
  Distance: -353; Region: promoter

AGCCGATGCA GCTCTCTTCG CGTTTTCAAA CAGATACAGA CTCAATTGAT 
TACTCGTGAT CTTCTTCGTG ATGACTTAAT CATCAACAAA GTCGTGACCT 
TTCTGGGCAA ATCCGCAGAT TTTGCATCTT ACAGCTCTGT AATTCTCCAC 
AGTATCCGTT CTGTGTTGAG CTCTTTCTCA TACAACACGC TTTTATCAAG 
CTATGCAGTT TGTGATAAAC CAAGAGTGAC GATTTTTGCT TACAAAACAT 
TTGTGAGTAA TGGGTTTTCA CCGGACATGT TCACGTTTCC TCCAGTTTTT 
AAGGCTTGTG GGAAGTTTTC AGGGATCAGA GAAGGGAAAC AGATTCATGG 
AATTGTTACG AAGATGGGTT TTTACGATGA TATCTATGTG CAAAACTCGC 
TTGTTCATTT TTATGGTGTG TGTGGAGAAT CAAGGAATGC ATGTAAAGTG 
TTCGGTGAAA TGCCTGTGAG AGATGTTGTT TCGTGGACTG GGATTATAAC 
TGGTTTCACG AGGACTGGGT TGTATAAGGA AGCT

AT4G38010.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 (TAIR:AT2G22410.1); Has 36420 Blast hits to 13424 proteins in 196 species: Archae - 0; Bacteria - 4; Metazoa - 28; Fungi - 56; Plants - 35898; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38020.1

Model type: Protein coding
Short Description: tRNA/rRNA methyltransferase (SpoU) family protein
Computational Description: tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 12174 Blast hits to 12170 proteins in 2688 species: Archae - 7; Bacteria - 9680; Metazoa - 153; Fungi - 96; Plants - 106; Viruses - 0; Other Eukaryotes - 2132 (source: NCBI BLink).
Link: InterPro Scan - TAIR