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Mutant Lines
15-0945-1

15-0945-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 3; Position: 301879 [Map]; Strand: w
- AT3G01850.1 - [+] show detail - Aldolase-type TIM barrel family protein
  Distance: 0; Region: exon1 (CDS)
- AT3G01850.2 - [+] show detail - Aldolase-type TIM barrel family protein
  Distance: 0; Region: exon1 (CDS)
- AT3G01860.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: respo...
  Distance: -766; Region: promoter

GANAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
CATCCTACTT TCATACCATA ATATCCATGT GAAGCCAGTT GGCGCCCAAA 
TCGATCATCC GATTGGCCTC CGCCGCTAGA TTTGCGAAGT CCGATGACAG 
CATCGACGGT GCTATTTTCG GCGACACCAT CTTCTTCCGC CGACTTTGGG 
GACNTGACCG ATGATGGATG GATAGTTGGA TACCTCTAAG AACCCCGGAT 
CTCTCCACCA AATCTCAACA TGCGTGATGA CGTGGCATCA GCCATTATGT 
TGACGTGGAG GTACCGTCAT AAATTCATAA TAATTAAATC GCAGGGTAAT 
TTTGTCTTTT GGTGTGGGGG TGATTTTGCA ATTTGAGAGA GACGACTTCT 
TTTTTTAATG GATCTTATTA CTACAACGAC CCGACCCATT TATATACCAC 
CCAAAACAGT TGGCCCAATT GTCTCTTTTT CTTTCTTTCT TTTTTGTTTG 
TGGGTCAACG ATCTAATGAT CTTTTTTCTT CCTTTAATTA TGGAATTTAT 
TTGTCATGTC CCTTCAAGTT CAATCTATAC TAAACAAAAC TTGATGAAAT 
TTAACTTAAT ATTTATCTGA ACCTCAAAAA AAAAANTCTA AATNTTTCCA 
ATTAAATGCN ATNGCNACAT ACATTTGNGA NACCTGANAN CNTGAAACAC 
NCCNCCNTCT TCAAAANGNC TANTATTTAN TCNNAAAATT NGGANNATTN 
GNTTNTTTTT TTTTT

3 prime edge [+] show sequence

Chromosome: 3; Position: 216711 [Map]; Strand: c
- AT3G01540.4 - [+] show detail - DEAD box RNA helicase 1
  Distance: -40; Region: promoter
- AT3G01540.1 - [+] show detail - DEAD box RNA helicase 1
  Distance: -40; Region: promoter
- AT3G01540.2 - [+] show detail - DEAD box RNA helicase 1
  Distance: -40; Region: promoter
- AT3G01540.3 - [+] show detail - DEAD box RNA helicase 1
  Distance: -45; Region: promoter

GATGTCCAAC TTTAGACCGT CTCTGTTAGT TAGGTTTATA AAACCATCCA 
TCGTCGCAAC AAAAATATCT GCACCTTAAT GAGCCGCCTC CTTCTTTTGG 
GACCTTTTGG GCCACTCCAA TTTTATTCCT AGGCCCATTA TATAATTTCC 
ATGTAAAGAA TAGAATTATT TAATGAGATT AGTTGAATTT AACAAAAGTT 
AATAGTGTCA TGTAAAAACG ACATGGATGA ACAAAAATAT CAACATTTTT 
CGCATAAATA ATAAACTAAG AGCTTCTATA TACAAAATTC AAGACATTTT 
TGGATTTGGT TTGACTTGGA CTCGTTTGGC TCTGCTGTAC AAATATACTC 
CAGCTAGTGC AGTCGCGGTA CCTGTTTATT TAACAAGTGA TTATATATTG 
CTTCAATAAA ATGAACAAGT GTAACAAATC CTTTACTAAT ATATACTACT 
AGTAGTTGTT TACCTATAGA GTTAAGAGGT GAGACTGGAG TTTTGAAGAA 
AAGAATGGAT GATGTAATAA CCACCACACG CTTCACGCAG TTCCCTACAG 
AGTGTGTTAC TGGAGACACC ATCTCCAATA TCATATACGA TACCTACAAC 
AACAACCCCA ATTTTTATGT GTTGATTAGA AGCCTAACAC TAACCGACTT 
TACAAAATTC AGTACAGTTT TTCTGAAACG GAGGAACTAG ACGGACCAAC 
CTGTTGGTAG CTATGCNAGC AACACCAGCC AGTAGAGACA TGATGCAAAC 
TCTTTTACCG N

AT3G01540.1

Model type: Protein coding
Short Description: DEAD box RNA helicase 1
Curator Summary: RNA HELICASE DRH1
Computational Description: DEAD box RNA helicase 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 49839 Blast hits to 48969 proteins in 3110 species: Archae - 949; Bacteria - 26028; Metazoa - 6650; Fungi - 4984; Plants - 2792; Viruses - 23; Other Eukaryotes - 8413 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01540.2

Model type: Protein coding
Short Description: DEAD box RNA helicase 1
Curator Summary: RNA HELICASE DRH1
Computational Description: DEAD box RNA helicase 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 50187 Blast hits to 49315 proteins in 3135 species: Archae - 949; Bacteria - 26432; Metazoa - 6592; Fungi - 4988; Plants - 2789; Viruses - 23; Other Eukaryotes - 8414 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01540.3

Model type: Protein coding
Short Description: DEAD box RNA helicase 1
Curator Summary: RNA HELICASE DRH1
Computational Description: DEAD box RNA helicase 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01540.4

Model type: Protein coding
Short Description: DEAD box RNA helicase 1
Curator Summary: RNA HELICASE DRH1
Computational Description: DEAD box RNA helicase 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01850.1

Model type: Protein coding
Short Description: Aldolase-type TIM barrel family protein
Computational Description: Aldolase-type TIM barrel family protein; FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G63290.1); Has 9076 Blast hits to 9073 proteins in 2640 species: Archae - 49; Bacteria - 5613; Metazoa - 177; Fungi - 138; Plants - 141; Viruses - 0; Other Eukaryotes - 2958 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01850.2

Model type: Protein coding
Short Description: Aldolase-type TIM barrel family protein
Computational Description: Aldolase-type TIM barrel family protein; FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G63290.1); Has 9076 Blast hits to 9073 proteins in 2640 species: Archae - 49; Bacteria - 5613; Metazoa - 177; Fungi - 138; Plants - 141; Viruses - 0; Other Eukaryotes - 2958 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01860.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR