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Mutant Lines
15-0954-1

15-0954-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 2; Position: 1575755 [Map]; Strand: c
- AT2G04520.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
  Distance: 0; Region: exon1 (5UTR)
- AT2G04530.1 - [+] show detail - Metallo-hydrolase/oxidoreductase superfamily protein
  Distance: -954; Region: promoter

GNGANAAACT AACAAAATCG GTTATACAAT ACAAAACTTT TGATCCCAAA 
TTCAACAGAT ATCTCTGAAT CTATCGCTTC CAAGGGTTTT CTCTAGCTTA 
ATCTCAGATT CGAATCGTTC CATAGTGGTG AGCTTCGTGT TCTTCTTTCG 
TCTCTTACTC CTGATTCTCG ATTTTAGGGT TTTCAGTAAT TGCGTCGGCG 
GCGAAAGTCT TTATCGCCGA TCGATCTTCC TTATCTAGAA ATTATTGATC 
AGAAACTGTT GGGTTTTGTT TGATTCTTGT CAAGTTTTGA TTTTTCATGC 
GAAATTGCTC AATCCCAATT CAAAGTTACG ATTTTTATTG AAAACCCTAG 
ATTGGTTTCT TCAAGTTTGT CACTTTGATT CAATCTAATA GCTTAGCTTA 
ATCGTTAAGT CTCTTTTTTT GGTTTTAGGT TTCATTTGCG ATTTAAAGGT 
TCTTGTTTTG GTATTTGTTT TGCTTTGGTT CTTTAAGTTT GAGGGGCTTA 
TGTAGATTAT AAGAGAGAAG AGTATTGCTT TGCATGTTTA AAGGAAGAAC 
TTTTAACTGA ACATTTGTAT GATTGGTATG TAGATACTAT GCCGAAGAAC 
AAGGGAAAGG GAGGAAAGAA CAGGAAGAGA GGAAAGAACG AAGCAGATGA 
CGAGAAGAGA GAGCTTATAT TCAAAGAAGA TGGACAAGAA TACGCACAAG 
TCCTTCGTAT GCTTGGAAAT GGAAGATGTG AAGCTATGTG TATCGATGGA 
ACCAANCGTC TTTGCCATAT CCG

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 1624795 [Map]; Strand: c
  - AT2G04650.1 - [+] show detail - ADP-glucose pyrophosphorylase family protein
    Distance: -202; Region: promoter
  - AT2G04660.1 - [+] show detail - anaphase-promoting complex/cyclosome 2
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: 15-0954-1 - 3-prime edge
```
TCTTCATCAA TGTAAATTTC AATCTTTTCT TCATTAATGT GTTCCGTTTG 
ATTTTGTTTC TTCAGTGAAA TGAAATTGAG ATTGGTTTCT GATTTTATCT 
TCTTGCCAGT GAAACCCTAG TAATTGTGAT TTTGCNTGGG CAAGAAATTA 
GGGTTTTAGG AGGTTTTGTT ACTTACTCAA GAGTGAAAAA GATGGAAGCT
```

AT2G04520.1

Model type: Protein coding
Short Description: Nucleic acid-binding, OB-fold-like protein
Computational Description: Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, IF1 type (InterPro:IPR006196), Translation initiation factor 1A (eIF-1A), conserved site (InterPro:IPR018104), Translation initiation factor 1A (eIF-1A) (InterPro:IPR001253); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G35680.2); Has 921 Blast hits to 921 proteins in 273 species: Archae - 305; Bacteria - 0; Metazoa - 209; Fungi - 83; Plants - 55; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G04530.1

Model type: Protein coding
Short Description: Metallo-hydrolase/oxidoreductase superfamily protein
Curator Summary: Encodes a protein with RNAse Z activity suggesting a role in tRNA processing. Protein contains a signal sequence for import into the chloroplast.
Computational Description: CPZ; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: tRNAse Z1 (TAIR:AT1G74700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G04650.1

Model type: Protein coding
Short Description: ADP-glucose pyrophosphorylase family protein
Computational Description: ADP-glucose pyrophosphorylase family protein; FUNCTIONS IN: transferase activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP-glucose pyrophosphorylase family protein (TAIR:AT1G74910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G04660.1

Model type: Protein coding
Short Description: anaphase-promoting complex/cyclosome 2
Curator Summary: a highly conserved ubiquitin-protein ligase involved in cell cycle regulation
Computational Description: anaphase-promoting complex/cyclosome 2 (APC2); FUNCTIONS IN: ubiquitin-protein ligase activity, ubiquitin protein ligase binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cullin homology (InterPro:IPR016158), Anaphase promoting complex subunit 2 (InterPro:IPR014786), Cullin, N-terminal (InterPro:IPR001373); BEST Arabidopsis thaliana protein match is: cullin4 (TAIR:AT5G46210.1); Has 1400 Blast hits to 1393 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 534; Fungi - 454; Plants - 255; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
Link: InterPro Scan - TAIR