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Mutant Lines
15-0970-1

15-0970-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 3; Position: 23106706 [Map]; Strand: w
- AT3G62470.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: 0; Region: exon1 (CDS)

NNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTTCTGTGC CAATTCCTCA AATATCTCCG GTTGCCCCCC 
TCTGTGGAAA TCAGCTGCAA ACTTGTTATA ATCAATCAAA GGGGTTTTCA 
TTCCTTTGTC AAGCATCTCC TCTAAGTATC TGCATGCCTC TCTCGACTTG 
CCTTCACCTA TAAGCCCTCT GATCAAAACC GTGTAGGAGT TATCGTCAGG 
ACAAATCCCT TTCTTGATCA TCTCTTCCCA AACTGCTCTC CCCATCTCAT 
AGTTTCTCGC CATGAAGTAT GATTTCATTA TCATGTTGAA TGTGTGTATC 
GATGGCTCAA TTTCGTTCTG GATC

3 prime edge [+] show sequence

Chromosome: 3; Position: 23081109 [Map]; Strand: w
- AT3G62360.1 - [+] show detail - Carbohydrate-binding-like fold
  Distance: -546; Region: promoter
- AT3G62370.1 - [+] show detail - heme binding
  Distance: 0; Region: intron1 (CDS)

AGTACTATGG TCAAACTCAC CAAATAGATC TTGAAAAATC AGAAATTTCA 
TCAATCTTAT ACAATCTACA AGTAATGTCA CCAAACCAAT AAGATAATGC 
AAAATCCGAT TCGAGTCAAC ACATTACCTT GACTGTCATC TTCCCGGCGT 
CATACTCGTG ATCGGCGTCC GGATCAAGTG CAGGTCGGAG CGGGAACTCG 
GAGCCGTCAA TGTCCTTCCA GTCATCGTTG TGACCATCGA GAGTGATAAT 
ACCCGGTCTG AAATCGGCTA AGACCTGAAT CTCCGAGTCC GATTCACAAC 
TCCATTCGCC GGATTCCTGG TGAGATACGA CCGTCTCCGC CGTGAAAATC 
AAGAGCCACG CTACAACAAC GAGCTGAAGC ATTTTGATTT CTCTACCGGA 
AATTTGGTTT CTACAGTTGA CTGACGATTA CTTGACTCTT CTTCAAACGG 
TAAGCAAATC ACGACAGCTG TAATTAAAAA ACAATTATTT TTAATTAAAT 
GTTATGTTTT AGTGGGCTTT ATAAAGCCCA TTAAGCCCTA AAGAGTCAAG 
AGAACCTTGA TAAAAACCAA CGGAGATATA CAGATCGGAG TCATCGGTCC 
GATATCTTGG ATC

AT3G62360.1

Model type: Protein coding
Short Description: Carbohydrate-binding-like fold
Computational Description: Carbohydrate-binding-like fold; FUNCTIONS IN: carbohydrate binding; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate-binding-like fold (InterPro:IPR013784); Has 321 Blast hits to 256 proteins in 98 species: Archae - 6; Bacteria - 117; Metazoa - 138; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62370.1

Model type: Protein coding
Short Description: heme binding
Computational Description: heme binding; FUNCTIONS IN: heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c-552/DMSO reductase-like, haem-binding domain (InterPro:IPR019020); Has 36 Blast hits to 36 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62470.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 39079 Blast hits to 12185 proteins in 290 species: Archae - 4; Bacteria - 32; Metazoa - 449; Fungi - 607; Plants - 36694; Viruses - 0; Other Eukaryotes - 1293 (source: NCBI BLink).
Link: InterPro Scan - TAIR