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15-0980-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 75087 [Map]; Strand: w
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 15-0980-1 - 5-prime edge 
    GATAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACTT TCATCCCTCG ACATGGAGTC TTTTTCTTGA TTTAAAACAA 
    AAAAGGAGTA AGAGAGAGAG GAGGGCTTTG ATTTGATTGA AAAGATATGA 
    CTGATCGATG TTCAGATAGA AGTAGATTCT CCTTCCACCA CACCCTTTTG 
    ACAATTGTGT TTAGTGTTGG GTGATGAGCA GTACTTTATA AATGTCTTGT 
    ACTTCTCCAG AAGTTGAAGT CCAGAGAGAG AAGGAAGAGA AAGAACGGTG 
    GAGAGGAAGA TGTGGTTTAG AGAGAGAGAG AGAGAGATAT NTCTNNCNCN 
    GGNNNNGTNN NNCACGCGCN CTNTATATAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 75039 [Map]; Strand: w
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 15-0980-1 - 3-prime edge 
    AATTGTCGAG CATGTCCATG TCGTCCTCCT CATCTCCAGC TTTTCCACCG 
    GACCACTTCT CATCTACGGA CCAGCTCTGT TACGTCCATT GCAGCTTCTG 
    CGACACTGTC CTTGCTGTAT ATTTGGATTA TTCTTATATC TCATCTCAAT 
    ATTTCAAATT TATAACTCTA GCTAGGGTTT CACATGAATT ACTAGTTAAT 
    TAATGTGTGA TATTAATTGG TAGGTGAGTG TTCCTCCGAG TAGTTTGTTC 
    AAGACGGTGA CGGTCAGATG CGGCCACTGT TCGAACCTTT TGTCGGTGAC 
    CGTGAGCATG AGAGCTCTTC TTCTTCCATC CGTTTCCAAC CTTGGCCATT 
    CCTTTTTACC TCCCCCTCCT CCTCCTCCTC CTCCAAATCT TTTGGTACAT 
    CGGTTTCATT CATCGAAACA AATTAGGGTT CTTTCATAAA AAAAACAGAG 
    AGTAATAATT AGGGCTTTTC TTCTCGANCA NGNCNGGGNC NNNNACCACN 
    CGTNCCNTAN A

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR