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15-1055-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 905071 [Map]; Strand: c
      • AT2G03070.1 - [+] show detail - mediator subunit 8
        Distance: -548; Region: promoter
    Flanking Genome Sequence: 15-1055-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT ACAACGTTCT ATATAAATTG ACAATATTTT 
    TTGATGGAAG TATACCAAAC CCTAAAGGGA TAATATATAG GGAACCCAAG 
    GGTTTAAATC TAAAACATTA ATGAAATCAC TTAACATCTT TAATCAAAAC 
    AAACAATTCA TTTTAAAACG TATATAGAAC AAGGTATACN GTAAATAGTA 
    TACTATTTAT AAAATAGAAT AGTATCTCTC AAAATGCAAC AACGGAACTC 
    AATTTCATCA CCNNTACACC AAGCGCAACA ACCGGAACCC TATTTCATCA 
    TCAAGTGCAA CAACGAAAGT CAATTCCCTG AACCTAAATT GTGTTCCTCG 
    CTCTGTAATT CGAAACCCCC AAATCAAATC TCACCCTAAA GTAATTAAGA 
    GACTCTAATT TGAAATCAAA AACAAGTAAC GAGGTAGGTG TAGGAACTTT 
    ATTGGGAGGA GAAAGAGAGA GGGGGAGAAA AAAAGAANGA GAGAGAAAGA 
    NAGAGGGGGA GAGAGAAAAG ATNNAGGGGA GAGAAAAGGG AANANANAGG 
    TNNACNNAAA GANATANAGG GGGNNAACNT GGAATTANTT TTTAAATTTN 
    NAGGATNTCN TNGCNTTTTT TTTANGCNAA NNNNTNANTN NNNNTTTTTT 
    GGGNNNNNTN GNNAATTNCC CNAANNNTTT NNNTTTTTNC NNNTNNNNAA 
    ANNGGGGNCC NNNNTTNTNA NNNNGNANAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 923633 [Map]; Strand: c
      • AT2G03090.1 - [+] show detail - expansin A15
        Distance: -4990; Region: intergenic
      • AT2G03100.1 - [+] show detail - transposable element gene
        Distance: 3176; Region: intergenic
    Flanking Genome Sequence: 15-1055-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTTT 
    AGTAATTAGT ATTCTTATTA TGGTAACATT TCAACACAGA ATAATGCAGA 
    CGCTGTTGGA AAAAAGTAAA TTAGCCGACA CCTACTCCTA AGAGATGCCT 
    AATTGCCTAC TATAACATGG GTAAAGCGAT GTATGTCGAG TAAAAGCT

AT2G03070.1

Model type
Protein coding
Short Description
mediator subunit 8
Curator Summary
Encodes a subunit of the Mediator complex. Regulates plant defense and flowering.
Computational Description
mediator subunit 8 (MED8); Has 21670 Blast hits to 11104 proteins in 489 species: Archae - 4; Bacteria - 472; Metazoa - 8306; Fungi - 2813; Plants - 2364; Viruses - 51; Other Eukaryotes - 7660 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G03090.1

Model type
Protein coding
Short Description
expansin A15
Curator Summary
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational Description
expansin A15 (EXPA15); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G03100.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.2e-225 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR