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Mutant Lines
15-1088-1

15-1088-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 6925615 [Map]; Strand: c
- AT3G19900.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
  Distance: -549; Region: promoter
- AT3G19910.1 - [+] show detail - RING/U-box superfamily protein
  Distance: -693; Region: promoter

TNTGATNNAA NAAACAAAAT CGGTTNTACA GATAACGGTC GGTACGGGAT 
TTTCCCATCC TACTTTCATC CNNGANTGNC GNATCAANTT GGNATNNNAT 
TTAATGAANA CACAAACAAA ANGATATGTA AGATGGTTTA CGCCTTGAAA 
TCTCATGTGT CGATGCTGTA AGAAAAAAAT TCAGATAATG AGACGAGCAA 
AAGACCAAGT AGATATTATG TGTCAATGTG TGGAAGGGCC GAGACGCCAC 
CGTTTCTTCG CTGAAGCGTG CAAGTTACAA AACCTTGACT TTAATGGAAA 
AAAACTTTGG CTTATTTTTG TTTATTCTGA TAACCTATCC AATATTTAAT 
TATTTACTTT TATCTCGAAA ATTAATTCAT CATAATTGTT GACTATTAAN 
CCAAATGGGA TATATANCGC GTTTACTATG ATAGCAATNN TAAAANTAAA 
TATNAANANG TCATCTAGAA CTAATNCNGG ATAANTATGC NGTACANGNG 
NATCGGCNCN TANNANCNCN NCNNGNGCTT CANATANAGN GACNCNNTCG 
GTGCATNNNC NANNTTTNCT NTNGNTNCNA NNANCAGTGN GCGNNCANNN 
CNTGNGGCNT NCCNANAACN NGANAACNNA NNCCCAGNCN TCNNNAAANA 
TCTNNCAACC ANATNNNCAA NNTNTAAGCG NTTNNTNNTA CNNANGGNGN 
GNTNCNNAAC GCTNNGNTGN GNAGANTNCN ATACNTTNAT ANNCGCANGN 
TNACAACNGC NTNGTNANCN CNGNNNNANT GGCCNNNGNN NATCNCCTGT 
CNTCCCACGA NNAANNANNN A

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 6925631 [Map]; Strand: c
  - AT3G19900.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -565; Region: promoter
  - AT3G19910.1 - [+] show detail - RING/U-box superfamily protein
    Distance: -677; Region: promoter
Flanking Genome Sequence: 15-1088-1 - 3-prime edge
```
TTTAAACGGN AGAGGTATTT TACCNTCCGT TACCGACCGT TTTCATCCCA 
TNTACCTGAA TACCCAAAAC TCTTTTGACT CANAATCGAA GTTTTCTTTC 
ATTTTTCTCA NCAAGCAGAA CTTATTTAAA TCTCATACGT TTATAATATA 
TAAACTGCCT TGATTAATAA TATAGATCTA CTATATCTTG TTAGCCTTGT 
GAAAGAAATA TTTGGATGCA CAAAGATTAA GGTCTTGAAT GGTTGTTGAA 
GCCATTCCAA ATCTGACCAA AGTTAG
```

AT3G19900.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3067 (InterPro:IPR021420); Has 276 Blast hits to 276 proteins in 83 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 2; Plants - 59; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G19910.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G63530.2); Has 15086 Blast hits to 12507 proteins in 429 species: Archae - 8; Bacteria - 555; Metazoa - 4333; Fungi - 1497; Plants - 5032; Viruses - 175; Other Eukaryotes - 3486 (source: NCBI BLink).
Link: InterPro Scan - TAIR