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15-1090-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19951261 [Map]; Strand: w
      • AT3G53860.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT3G53870.1 - [+] show detail - Ribosomal protein S3 family protein
        Distance: -227; Region: promoter
    Flanking Genome Sequence: 15-1090-1 - 5-prime edge 
    CTNGATAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC GCTGACGCCA TTGTCGTCGC CGGAAAATGA 
    TGACAGAGAA GATTCAAAAT GCGAGATTTT TTTTTCTCTT AATTACTTGA 
    TTGAAAACAT CCATGGGCCC AAACCAATTA TTTAACTATT TTATCAATGT 
    ATGGGCCAAA TTATTCAACA AATAGGCCCA AAGGAAATTG GATGTGAAAC 
    CTGATTTTCT GAATTAGGTC AAGTATAAGT ACTAATAGCA TCTCTTTCGA 
    GATTACGCCG CTCATTTTTA GGGTTTCAGA TATAGGCAGA TTCTCACATT 
    TGCAAACATG ACGACTCANA TCAGCAAGAA NAGAAAGGTG AATTGNGTGA 
    TTCTGTTCAT TTTGTTCTTT CTATGGATTT ATCGTATTGG AACTGTTTTG 
    GTAACTGNGT TGANATTTTG ATTTTGTAGT TTGTAGCGGA CGGNGTGTTC 
    TACGCTGAAT TGAATGAGGT TCTTACAAGA GAGCTAGCAG AGGATGGTTA 
    CTCTGGNGTT GAGGTTAGGG TTACTCCTAT GAGGACTGAG ATTATCATCA 
    GAGCTACACG TACTCANAAT GTTCTNGGNN TGTTTTTGAT CTTCNAGCTA 
    ATCATTNCTT CTATTTACNG GNGNGACTGN NAAATTTGAT GNNTNTTNGG 
    NGGNAAGGGG AGGAGAATTA GGGAATNGAC TTCCCTTGNT CANAAGAAAA 
    TTCANNTTCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 19951252 [Map]; Strand: w
      • AT3G53860.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT3G53870.1 - [+] show detail - Ribosomal protein S3 family protein
        Distance: -236; Region: promoter
    Flanking Genome Sequence: 15-1090-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    AGAACACTGA GCAAAACCCT TTCTCCTTGA AACCCCCAAG ACCTCCGTCT 
    TCCTCCAACG CTGCATCTTC CACCGCTGTG GCTTCCACTT CAGTTGAACC 
    CCAAATTCGG AACCCTAAAC CTAGCACAAA CGTCTTACCA TCGACCTCGA 
    ATT

AT3G53860.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31600.1); Has 70 Blast hits to 70 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G53870.1

Model type
Protein coding
Short Description
Ribosomal protein S3 family protein
Computational Description
Ribosomal protein S3 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, membrane; EXPRESSED IN: root, leaf; CONTAINS InterPro DOMAIN/s: K Homology, prokaryotic type (InterPro:IPR009019), K Homology, type 2 (InterPro:IPR004044), K Homology (InterPro:IPR004087), Ribosomal protein S3, C-terminal (InterPro:IPR001351), Ribosomal protein S3, eukaryotic/archaeal (InterPro:IPR005703); BEST Arabidopsis thaliana protein match is: Ribosomal protein S3 family protein (TAIR:AT2G31610.1); Has 5912 Blast hits to 5911 proteins in 2101 species: Archae - 256; Bacteria - 3650; Metazoa - 372; Fungi - 151; Plants - 167; Viruses - 0; Other Eukaryotes - 1316 (source: NCBI BLink).
Link
InterPro Scan - TAIR