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15-1138-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19568290 [Map]; Strand: w
      • AT2G47760.2 - [+] show detail - asparagine-linked glycosylation 3
        Distance: -25; Region: promoter
      • AT2G47760.3 - [+] show detail - asparagine-linked glycosylation 3
        Distance: -25; Region: promoter
      • AT2G47760.1 - [+] show detail - asparagine-linked glycosylation 3
        Distance: -25; Region: promoter
      • AT2G47770.1 - [+] show detail - TSPO(outer membrane tryptophan-rich sensory protein)-related
        Distance: -174; Region: promoter
    Flanking Genome Sequence: 15-1138-1 - 5-prime edge 
    CATGAAAACA GAGCAAATCG CATCAGCGTC TAGCCAACGC CGCGTAACAG 
    ACAACTACTT CCATATTACT ACTCTTCTAA TTAGCCCAAA TTAAATGAGC 
    CTATTGGGCG TTCTTGTCTT AGTCGGTGTA GAGCCCAATT GTTGTTTTAT 
    TTTTTTAATA ATGCAAAAGT ATTAAGCGAT AAATAAATAA GCATCGCAAT 
    CGTCCCAAAA CTGTGTGTAT GCATCAGACA TGAGCATATA GAGTAAGCAC 
    GTGTCCACAC TTTTTCACAA AGTTATCTAA AAACAAAAAA CAATTAATTA 
    GCATTCGACG TGTACATATC ACTCGCCACG TGTACAAGAG CCTTGGCCTT 
    TTTGCTTCTT CTTCTTGTCT ATTAATATCA TCTCCTGATT ATACTCTCTT 
    TTGACCAAGC TGCTTCTTCT CCATCGATCC AACATCTCAA ATCTCAGTAA 
    TCTTGTTCCT TCGATTCTGT TTTGGACGTT TGTAATGGAT TCTCAGGACA 
    TCAGATACCG CGGCGGAGAC GACAGAGACG CTGCAACGAC GGCTATGGCC 
    GAGACAGAGA GGAAAAGCGC TGACGACAAC AAAGGAAAAC GCGATCAAAA 
    GAGGGCGATG GCGAAACGTG GTCTCAAGTC TCTGACGGTA GCGGTTGCGG 
    CTCCTGTGCT CGTGACGCTC TTCGCTACGT ATTTNCTNGG CACAAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19568174 [Map]; Strand: w
      • AT2G47760.2 - [+] show detail - asparagine-linked glycosylation 3
        Distance: 0; Region: exon1 (CDS)
      • AT2G47760.3 - [+] show detail - asparagine-linked glycosylation 3
        Distance: 0; Region: exon1 (CDS)
      • AT2G47760.1 - [+] show detail - asparagine-linked glycosylation 3
        Distance: 0; Region: exon1 (CDS)
      • AT2G47770.1 - [+] show detail - TSPO(outer membrane tryptophan-rich sensory protein)-related
        Distance: -290; Region: promoter
    Flanking Genome Sequence: 15-1138-1 - 3-prime edge 
    TTTTCATGGC GGGCGCCTCA TCACCGGCGA GTTTGAGAGC TTCTCGTAGC 
    CGTCGGCTGG GGAAGGAGAC GAATCGATCC GATCTATTCA AAAAACCTGC 
    AGTTCCATTC GCATTCGCGC TAATTCTTGC TGATGCAATC CTAGTCGCAC 
    NTTATTATCG CCTATGTTCC ATGTGAGAGC TATTTACCTC CTTTTTTTTT 
    TNGCTNGCGT NTCCCTCAAA ANGNNCNTTN GCNTAGGTTT AAAACNAAAT 
    TTCGTNNTTN NCCTTTAACA AACCCAAAAA TCNATGGGGA NNCTNACNTG 
    TNANAGGNAA GNGTNAAGGG NNAACNGGGG TTTNTTNAAA GAAAACTANT 
    AGNNTTNAAG GNAAATTTNT NTANTNGGGG CNGGTTAGGG GGTTTNTNGG 
    GGGAAAAAAA AACTNNGGNA ACTTNAANGG NAATNCNGGG CCNTNGGTTN 
    NTCCANNNGG TTNCCTTTNT NTTNNCTNNG CNGGGCAAAA NTTANNNGGG 
    GGGGAAGTCT NCCCTGCTNN GGGGCTNGNA ATCCCCTNTT TTTAAATCNC 
    CTNTNTTGGN ATTACCNGNG GAATTGGANC CANCCATCNC TTNATTNGNC 
    NNAATTCNAC TCTNTTACNT TTGGCAAATT NTTTTGGGGG TNCTNTACAT 
    NGNAAATCNG GGGATCGNNT NGATCATNNN CNNGAAAACT GAGGGGGNTT 
    AAANNAAAAA TATTTTTATN TTTTTTNANN AANNTTTGNA AACNTTGNNA 
    NCNNTNC

AT2G47760.1

Model type
Protein coding
Short Description
asparagine-linked glycosylation 3
Computational Description
asparagine-linked glycosylation 3 (ALG3); CONTAINS InterPro DOMAIN/s: Glycosyltransferase, ALG3 (InterPro:IPR007873); Has 381 Blast hits to 338 proteins in 173 species: Archae - 2; Bacteria - 2; Metazoa - 149; Fungi - 152; Plants - 35; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47760.2

Model type
Protein coding
Short Description
asparagine-linked glycosylation 3
Computational Description
asparagine-linked glycosylation 3 (ALG3); CONTAINS InterPro DOMAIN/s: Glycosyltransferase, ALG3 (InterPro:IPR007873); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47760.3

Model type
Protein coding
Short Description
asparagine-linked glycosylation 3
Computational Description
asparagine-linked glycosylation 3 (ALG3); CONTAINS InterPro DOMAIN/s: Glycosyltransferase, ALG3 (InterPro:IPR007873); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47770.1

Model type
Protein coding
Short Description
TSPO(outer membrane tryptophan-rich sensory protein)-related
Curator Summary
Encodes a membrane-bound protein designated AtTSPO (Arabidopsis thaliana TSPO-related). AtTSPO is related to the bacterial outer membrane tryptophan-rich sensory protein (TspO) and the mammalian mitochondrial 18 kDa Translocator Protein (18 kDa TSPO), members of the TspO/MBR domain-containing membrane proteins. Mainly detected in dry seeds, but can be induced in vegetative tissues by osmotic or salt stress or abscisic acid treatment. Located in endoplasmic reticulum and the Golgi stacks.
Computational Description
TSPO(outer membrane tryptophan-rich sensory protein)-related (TSPO); CONTAINS InterPro DOMAIN/s: TspO/MBR-related protein (InterPro:IPR004307); Has 567 Blast hits to 567 proteins in 188 species: Archae - 24; Bacteria - 226; Metazoa - 151; Fungi - 6; Plants - 53; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Link
InterPro Scan - TAIR