1. Home
  2. Mutant Lines
  3. 15-1169-1

15-1169-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12588164 [Map]; Strand: c
      • AT4G24270.1 - [+] show detail - EMBRYO DEFECTIVE 140
        Distance: -780; Region: promoter
      • AT4G24270.2 - [+] show detail - EMBRYO DEFECTIVE 140
        Distance: -780; Region: promoter
      • AT4G24275.1 - [+] show detail - unknown protein; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; B...
        Distance: -355; Region: promoter
    Flanking Genome Sequence: 15-1169-1 - 3-prime edge 
    TTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    AATAGCATGT TTTCTTGTAG TTGTAGTGAA TAAATCACAG AGTAACGAAT 
    AAGTAAAAGT TGTCTCTAAT CTACACTATT ATTGAGTAAT TGACTATTGA 
    GCAGCTAGCA TAACGTAAAT CTTTTCACCT GTTTGTCTCC CAATTATTTT 
    ATTTTAACAC ATTTTTGAGA CACCAAGTAT GAATGCTATA TGTAATGCCA 
    AACATTTGCC AGACAAGTGC ACATGCCCTG TGTTAAAAAC GTTACTTACA 
    ATCTCCACCA GCTGTAATAT TGTGCGGATC

AT4G24270.1

Model type
Protein coding
Short Description
EMBRYO DEFECTIVE 140
Curator Summary
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
Computational Description
EMBRYO DEFECTIVE 140 (EMB140); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lsm interaction (InterPro:IPR008669), RNA-processing protein, HAT helix (InterPro:IPR003107), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 6865 Blast hits to 6296 proteins in 569 species: Archae - 0; Bacteria - 876; Metazoa - 2538; Fungi - 1681; Plants - 1001; Viruses - 0; Other Eukaryotes - 769 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G24270.2

Model type
Protein coding
Short Description
EMBRYO DEFECTIVE 140
Curator Summary
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
Computational Description
EMBRYO DEFECTIVE 140 (EMB140); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lsm interaction (InterPro:IPR008669), RNA-processing protein, HAT helix (InterPro:IPR003107), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 6638 Blast hits to 6081 proteins in 560 species: Archae - 0; Bacteria - 845; Metazoa - 2454; Fungi - 1660; Plants - 947; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G24275.1

Model type
Protein coding
Curator Summary
Identified as a screen for stress-responsive genes.
Computational Description
unknown protein; Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR