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15-1188-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 539064 [Map]; Strand: c
      • AT2G02130.1 - [+] show detail - low-molecular-weight cysteine-rich 68
        Distance: -935; Region: promoter
    Flanking Genome Sequence: 15-1188-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTGTTGCAAA TATGCCAGAA TTTTAATTCA AGTTAACAAT ATGAAGTATA 
    AAAACGTTTT TCTTAAATTA TGGATGTCTG TAAAAAATTT TATTTTATTT 
    TATTAATTCT TTCATTGTGG TTCTCTGTGT TTTTTTTTAT GTCTATACCT 
    TAAAACTCTA ACACAATCAT TTTATTTATA AAGTTATGAT TCTAACACAC 
    AAATAGTAAA TTACTAATTT CTATTGTAAC AGTTTTCATT CATGATTTTT 
    TTCGCTCTAT TTTTTTTTTG GNNGGATTTT TTTNCGGCTA ANTTTTTNNT 
    TAANCTGNAT TTNNTNCCCN NTTTTTTAAA TTTNNTTTGG CNGGNNNAAA 
    ANNTTNNNCC AAANNCANNN GGGNTTTNNN CNNNCNTANN GTNAAGNNTN 
    GANNNNAAAA NCCCANGNAA NNGGNNANNA NCAAANTNTA GGNCCAAACN 
    TGGNANCNTC CAANNAANNA AANTTNGTTT NCCNNAANGG GCNNCCCCAG 
    GGGTGNNTTT TTNGNGNNCA AAAAACCAAA AAAAGGGNCN GGGGTTTTNA 
    ANCCCAAAAT TNNTTCNNCG CCCCAGCCGG GGGGGACCCC CTNTTTTNGG 
    CCNACCCCAA TTTTTNCCNT TTTTAAAGGG CCNNTTTTTT NGGNNNTNAA 
    AAAAAAAAAA AANNGCCTTN ANCNTNGNCC CGNCCTTTNA AACCAAAANN 
    TNCNTTTNCC CNGGGGGGGG GG

AT2G02130.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 68
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational Description
low-molecular-weight cysteine-rich 68 (LCR68); FUNCTIONS IN: peptidase inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 69 (TAIR:AT2G02100.1); Has 401 Blast hits to 401 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 401; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR