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15-1202-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2509256 [Map]; Strand: c
      • AT4G04930.1 - [+] show detail - fatty acid desaturase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-1202-1 - 5-prime edge 
    GGGATAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC TCTCACGTCC TCCTTTCCCC ATTATTGTTT 
    GTTCTTCTCT CCCGTCGGTT TTTTTTCTGT TGTTTTTTTC CGGTGAAACG 
    ACGGGAGAGA GGGAAAGTCA AACGAGAGAG AGATTTTGGT TTCGAAGATA 
    ATTTAAAGTG GTGCAATTTA GGAGATGGTG CATAGGTTTT CAATGGTGGA 
    AGAGAAGAGA AGAGAAGACG TTGCACGTGC ACATGCATGT GTGTGCGAGG 
    ATATAAACCA ATAATATGCN GGGATTTTCT TAACTAACTA TATTTAGTCA 
    TTTTTCAATT TTTCTTTTAT TTTTATTGGG TTTTTTTTTT TTTTTNGGTN 
    AAAAANTNNT NTTTNNNCNN AANNNNAAAA ANNNNNNNNT NANNNANTTT 
    NCCCGGGNAA ANTNNTTTTN NCCCCTTTTT AAANCCANAA NNAAAANCCC 
    CCTTTTTNNT TTCCCCCNCT TTNNNGGGNA AANCNNNANG GNTTTNTGGG 
    GNANAAANNC TTTNNANNGG GTNNTNNNNC CNCTNGNNNN NANNTNNNNN 
    NCNCCNTNGC NNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2509264 [Map]; Strand: c
      • AT4G04930.1 - [+] show detail - fatty acid desaturase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-1202-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTTA 
    ATCATCAAAC GAAGAAGAAA GAGAAGGAGT CATGGCTACA GATTTCTTTT 
    GGTCTTACAC CGATGAGCCT CATGCTTCGA GGAGACGTCA GATTCTGTCT 
    TGTTACCCTC AGATTAGACA ACTCTTTGGT CCTGATCCAT GGGCNTTTCC 
    TCAAGGTTCT TATTCTCTAC CATTTTTCTC GGATCNCNAA NCNNNNNNGC 
    CATNCNNCNA GGNCGTCTAG TTTTGTTCTT TGTCCTCTTT TTAAAAATGT 
    GTTTGATACA TAAACGAAGG TTGTCGAAGA AACAAACGAA TCTATTATTT 
    TCTTACGTTT AGAAATTTCG GATTTGTTTT TGATC

AT4G04930.1

Model type
Protein coding
Short Description
fatty acid desaturase family protein
Curator Summary
Encodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues.
Computational Description
DES-1-LIKE; FUNCTIONS IN: oxidoreductase activity, sphingolipid delta-4 desaturase activity; INVOLVED IN: sphingolipid biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sphingolipid delta4-desaturase, N-terminal (InterPro:IPR013866), Fatty acid desaturase, type 1 (InterPro:IPR005804), Sphingolipid delta4-desaturase (InterPro:IPR011388); Has 703 Blast hits to 697 proteins in 257 species: Archae - 0; Bacteria - 174; Metazoa - 227; Fungi - 120; Plants - 36; Viruses - 3; Other Eukaryotes - 143 (source: NCBI BLink).
Link
InterPro Scan - TAIR