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15-1254-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13232732 [Map]; Strand: w
      • AT2G31080.1 - [+] show detail - transposable element gene
        Distance: -5684; Region: intergenic
      • AT2G31081.1 - [+] show detail - CLAVATA3/ESR-RELATED 4
        Distance: -5315; Region: intergenic
    Flanking Genome Sequence: 15-1254-1 - 5-prime edge 
    ATTATACTAG ATCTGGGTTT ATTTCGCTAA TAAGAAAGAA TATAGGATGT 
    ATTTTGCTAT TTTAGAAACG TTCAGGACTA GAAAACAAAT AAAAATCATT 
    GCACGGGCCT GGCTCAACCC ATCAAAATTC AAAGTCCAAT TTTTCTCTAG 
    TTAAAATTAA TGAAAATTTG CATTTATAAC ATACAAAAAT ATTATAATTA 
    GGTAACTAAC CAAAATAAAT AGTCCAATGA TATTGTGTGT ATTTCCTATA 
    TTTTAGACAT AAGTGACCCT AAGATAAAAC CAATCAACTC GCCGGTACCG 
    ATTACAACGT CGTCACCACC ACAAAGTCAC CACCACCATC ACCGCCATCA 
    TCATCACCGC CATCGTAATC ACCACGTCGT CACTACTAAA ACCACCAGAC 
    CGTTACTATT TATCACGGAT ATCACCGAC

AT2G31080.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.3e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT2G31081.1

Model type
Protein coding
Short Description
CLAVATA3/ESR-RELATED 4
Curator Summary
Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.
Computational Description
CLAVATA3/ESR-RELATED 4 (CLE4); BEST Arabidopsis thaliana protein match is: CLAVATA3/ESR-RELATED 3 (TAIR:AT1G06225.1); Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR