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15-1322-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30039725 [Map]; Strand: w
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon7 (CDS)
      • AT1G79840.1 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 15-1322-1 - 5-prime edge 
    GATGCAGCTG CTCACTCCGG TCGTCCCCAC AAGAGAAGTG TACTTCGTGA 
    GAAGCTGCCG GCAGCTGAGC CCTGAGAAAT GGGCAATAGT GGACGTCTCG 
    GTCTCCGTGG AGGACAGCAA CACNGGAGAA GGAGGCTTCT CTACTGAAAT 
    GTCGAAAACT CCCCTCCGGT TGCATCATCG AGGACACCTC CAACGGTCAC 
    TCCAAGGTCA CCTGGGTGGA GCACCTCGAC GTGTCTGCAT CCACAGTTCA 
    GCCTCTCTTC CGCTCCTTAG TCAACACCGG TTTGGCCTTT GGGGCTCGAC 
    ACTGGGTCGC CACCCTTCAG CTCCATTGCG AACGCCTTGT CTTCTTCATG 
    GCTACCAACG TCCCCACCAA AGACTCTCTC GGTCCGTCTA TATATCCGGA 
    TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30039609 [Map]; Strand: w
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: intron6 (CDS)
      • AT1G79840.1 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 15-1322-1 - 3-prime edge 
    GCTGCATCTC TCCGAACATC TGCCACAGTA GTTATAAACC ATATCCATCC 
    CATGTATCAG CTGAGTCGTC ATTCATCAAT TATCACTATA TGTATATATT 
    GATGAGTACT CACCAGCTGA ATGGCCCCGT CGATCCGTGA AGGCCCTTCG 
    CCTTGCCGGA TAACATCGAC CGTTGCAGCC TTTGAGATCA AGCATGCAAA 
    TATCTCTTTC CATTGTCCCT GCGCGTTACA CGTACACATC AATTCCTTTT 
    TATACACATA GAATAAGTTA TAGTAGCTGG TAACAGTAAT AAATAATGGA 
    AAAGTACCAC GTCCATGAAA CTCTGGGCAA GTTTATGTGC GTCCATAAAC 
    ACAATTCCCG CATCTCTAGA TGCTTCGATG GTTTTCCTTC CAGGAAACGA 
    AGAGGCTTGC GCTTGGGGAA ACTCCTTGAG GTACTCATCG TAGTTGAGAA 
    TCTCACGGCC AGTCTCAACG CTGCGGAGCC ACATAGGTTC GCCTGAGGTG 
    GCCATCTTCT GGAGTTCAAG GGTGGCTCGG TTAGAAATCT CGGCGATACG 
    GGACTTCTCG AGGGCAAAGA CGCCCGTGTA GAAATCGAGA GAGCCGAGAC 
    GGTGTTCTTG ATCGTCGGAG CATGAAGCCT GCAGGGGATA GGGAGTGCGT 
    CCGAGAGCTG CACGAAGCT

AT1G79840.1

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79840.2

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1).
Link
InterPro Scan - TAIR