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15-1327-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8348348 [Map]; Strand: w
      • AT5G24440.1 - [+] show detail - CTC-interacting domain 13
        Distance: -572; Region: promoter
      • AT5G24450.1 - [+] show detail - Transcription factor IIIC, subunit 5
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 15-1327-1 - 5-prime edge 
    CTTCGGTGGC TCTTCTCCCA CCGCCGTATG TTCTTCCAGC GCTCCGGACC 
    GCCGTCTGGT CTGACTTTAA TTTGAGATCT ATTCCGATCC CTAACAGCTA 
    CTTCTGGTAT ACTATCGTTC TCTCTCTCTA ACACCTCTGC GTATTTGGAT 
    CGTATTGACT AGAGTCTTCC CATTATACTT GCATCGTTCT CTCTTCCATG 
    GTTTCGAACT TGTTTAAGCT

AT5G24440.1

Model type
Protein coding
Short Description
CTC-interacting domain 13
Curator Summary
RNA-binding protein, putative. Contains PAM2, PABC binding domain.
Computational Description
CTC-interacting domain 13 (CID13); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 10 (TAIR:AT3G49390.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24450.1

Model type
Protein coding
Short Description
Transcription factor IIIC, subunit 5
Computational Description
Transcription factor IIIC, subunit 5; CONTAINS InterPro DOMAIN/s: Transcription factor IIIC, subunit 5 (InterPro:IPR019136); BEST Arabidopsis thaliana protein match is: Transcription factor IIIC, subunit 5 (TAIR:AT3G49410.1); Has 680 Blast hits to 642 proteins in 201 species: Archae - 0; Bacteria - 19; Metazoa - 202; Fungi - 159; Plants - 80; Viruses - 10; Other Eukaryotes - 210 (source: NCBI BLink).
Link
InterPro Scan - TAIR