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15-1353-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23202991 [Map]; Strand: c
      • AT3G62720.2 - [+] show detail - xylosyltransferase 1
        Distance: 78; Region: intergenic
      • AT3G62725.1 - [+] show detail - transposable element gene
        Distance: 801; Region: intergenic
    Flanking Genome Sequence: 15-1353-1 - 5-prime edge
    GCACACACAA CACAAGCATA GCTAAAGGCT AAACCAAAAG TCACGGGAAC 
    AAAGGTAGTA AATATCCTAA AGTTACAAAA ACTCATATAC ATGTAGTATG
    TCTGTCTTAA GAGAGTCTAC AAGGAAATCA TATCCAAAAG TGATTGTGAT
    GAATTTTTAT TTGTTATGCT AAAGAGATTA TGATGAAATA ACGTCTACAA
    TAAATCATTA AATACTCCAT ACACGACTCC ACCATGAATG GGAGATCAAA
    ACAATTAAGT AAACTACAAA CAAATAAAAT TGAATAAAAC AAATAAACGT
    GTGTCCCCTA AACGCAAAAT TAAAAGATAC AAAACAATAT ATCCTCTCAC
    TCACTCACGT CGTCGTCGTA CTAAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23203107 [Map]; Strand: c
      • AT3G62720.2 - [+] show detail - xylosyltransferase 1
        Distance: 194; Region: intergenic
      • AT3G62725.1 - [+] show detail - transposable element gene
        Distance: 685; Region: intergenic
    Flanking Genome Sequence: 15-1353-1 - 3-prime edge
    GTGTGTGCTA NAGANTNTTC AACAATTACA ATTNTACCTG TAATTTTCAG 
    AATATTAGTC TTGTACACCC TATACTCTTT GGTTTTACGT ACGTTCCTCT
    TATTAACATT ATAGCATATG CATATGCATA GAATATTAGT TGAAAAGTTT
    GAAACGTCGT TGCGTTGTAA TGTGGAGTGT ACATAGTGAT CAATGGTTTA
    ATTGGGATAA TTTCCTTTAG ACAAACGAAT CAAAACACTT CAGAGATAAT
    TTCTTTTGGT GAATTATTGC GTTCGTAGTT TTTTTACTCT GAAGTTTCTT
    TTGGAGATTA CATTTAAATC ACANTGTATA ACTCCAACAC CGCCTCCTTT
    GTGGAATGCA CGACGATAAT TTGTCACTAT TATCTATAAT CAAACATGAG
    TCACATGAGT ATATGACACA ATAGTTTATT TATTAAGTGG TTTGCAAAAA
    TATTTTTTCT CTTCAAATAT ATGTAGGCTC ACTAAAATAA TATCTTATTT
    GTGGGCTTAG ATTTGAATCT TATGAAGTAT TCATACGTCT CGCGCCTCGC
    GGCGTAATGC ATACGTGTAA CATCATAATC GTCATTAGAA ATGATTGAGT
    TCAACGTGTT ACGGTTCATA TCTTGCTGGA AAGTGGAAGA AATTGTTATC
    TTTTCTACTG GCCCATTCAT TTAGCTAATT CTTATTTTCT CAATTTAGCT
    GAN

AT3G62720.2

Model type
Protein coding
Short Description
xylosyltransferase 1
Curator Summary
Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides.
Computational Description
xylosyltransferase 1 (XT1); FUNCTIONS IN: xyloglucan 6-xylosyltransferase activity, UDP-xylosyltransferase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: polysaccharide biosynthetic process, xyloglucan biosynthetic process, root hair elongation; LOCATED IN: mitochondrion, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: UDP-xylosyltransferase 2 (TAIR:AT4G02500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-41 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR