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15-1389-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 268217 [Map]; Strand: w
      • AT4G00630.2 - [+] show detail - K+ efflux antiporter 2
        Distance: -186; Region: promoter
      • AT4G00630.1 - [+] show detail - K+ efflux antiporter 2
        Distance: -167; Region: promoter
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: -809; Region: promoter
    Flanking Genome Sequence: 15-1389-1 - 5-prime edge 
    CTCTTACTCG TACTCGCATG TGGTGCGTGC AATATACACG TGGTTCGAAT 
    CAACGGCTAC GTTTTACTGA TAGGTGGCTC GTTTAGTTTT GCACTGCCTT 
    TGGGTGCGCG TGACCAAGTC ATTTTCCAAA TGTGTTTTAA TATTTGTGAA 
    CTATTATTAA TAAAAAAGCG AGCGACGTTG TTCTTTGATG AGGGAACGAC 
    CGTACGCTTG GCGACCTTCT CTGATTGCGT AGAGTCGTTT TCCTTATTGG 
    GCTTACCTAG TACCGTCAGC CCACAATGTT TTCATTTCTT TCCCACCTAA 
    AACTAAAAGT ACTCACAAGT CACAACTTAA ACCAAGTACA CAAGGATTTT 
    ATCATGGGAT TATCGTGTTT GAAGACTAAA AAGAGCACAC CATCACCCCC 
    ATTAGTGCAG GTAGAGTAAG ACAGTAACTT TTGGGTTCAT ATTACCGAGC 
    AAGAACCGTT ATTTGTGATT AGACATGTTA TAAACCACTG CTTTAGTGAC 
    TATTTAAAAC AATATATTAC ATGTCGTAAT CATGCAACCT AACTATGTTT 
    TCATTAATCA AATACAAAGT CTACAAGTAT GGACATTAAT CTACAAGNTT 
    ACATCAATCT GAACAGCGAC GAAGAGAATT ACCGAANATT GTCNAACAGA 
    GTCTACANGT ATGGGNATTA CNATCGGGCA NTCTAAGCAG CCTCAATTTT 
    GNAATCCATA AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 268101 [Map]; Strand: w
      • AT4G00630.2 - [+] show detail - K+ efflux antiporter 2
        Distance: -70; Region: promoter
      • AT4G00630.1 - [+] show detail - K+ efflux antiporter 2
        Distance: -51; Region: promoter
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: -925; Region: promoter
    Flanking Genome Sequence: 15-1389-1 - 3-prime edge 
    AGTAAGAGAG TTGGTGGTAT ATTCACGGCA TATTATATGT GCACGAATTG 
    AATCTCTCTA AGCACGAGAG GGCATTTTCG TAACTTTCTT ATAAAAAATC 
    CTACCACGAG TGATTGGGCA AAAAAAACTT GAAAGAGGAA AGAGAGAGTT 
    GGACNGGAAA ATCTGAAGAC CGCCGAGAAA AATACTGTTG AAACGGAACT 
    CTCTTACGTT TTTTCTCAGG AGATACNGTT TCATCTTCCT CTCAGTAACT 
    ACTCGATTCT CACTCTCTCT CGCCGCCATT GATTCTTCAT CAGCTGAAGC 
    CTTGAAGCTC TCTTCTCTTA TGATCGGTCA GTCTCTTGTT CTCTCCGTCT 
    TTCTGCAGCT GTAATATGGA TTTTGCGTCT AGCGTTCAGC GCCGGAGTAT 
    GTTTCACGGT GGTGCGGATT TTGCGAGTTA CTGCTTGCCG AATCGAATGA 
    TAAGTGCGAA ACTGTGTCCC AAAGGACTCG GCGGCACTAG ATTTTGGGAT 
    C

AT4G00630.1

Model type
Protein coding
Short Description
K+ efflux antiporter 2
Curator Summary
member of Putative potassium transporter family
Computational Description
K+ efflux antiporter 2 (KEA2); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153), K+/H+ exchanger (InterPro:IPR004771), NAD(P)-binding domain (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 1 (TAIR:AT1G01790.1); Has 34304 Blast hits to 27699 proteins in 2887 species: Archae - 928; Bacteria - 15112; Metazoa - 9897; Fungi - 1524; Plants - 1371; Viruses - 95; Other Eukaryotes - 5377 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00630.2

Model type
Protein coding
Short Description
K+ efflux antiporter 2
Curator Summary
member of Putative potassium transporter family
Computational Description
K+ efflux antiporter 2 (KEA2); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process, transmembrane transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K+/H+ exchanger (InterPro:IPR004771), Cation/H+ exchanger (InterPro:IPR006153), NAD(P)-binding domain (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 1 (TAIR:AT1G01790.1).
Link
InterPro Scan - TAIR

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR