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Mutant Lines
15-1393-1

15-1393-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 24592242 [Map]; Strand: w
- AT1G66050.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
  Distance: 0; Region: exon8 (CDS)

NNNGAGACGA CNCCNNGTGC NCACANCTTC TGCANNNCAT NCNNNNAANC 
NAAGNTGGNN GGGATANCTC ACCTGNGAGA CAGAAGCAAT GGCTGTGCCG 
TAAACTACGT GCAAAGAAAA ACATCATGAC CTGCCCTTGC TGCACAACCG 
ATCTCTCCGA GTTTCTCCAA AACCCGCAGG TAAAAAACAG AAACCAACTC 
TTCTTCTTAC ATTCTAGTTC TTCCCAGTTT TGTTGTGATT AACTTTGGCT 
AATCACAAAT GTCCAATAAA ACAGGTGAAC AGAGAGATGA TGGAGATAAT 
AGAGAATTTT AAGAAGAGTG AGGAAGAGGC TGAAGTTGCG GAGTCATCAA 
ACATTTCTGA AGAAGAAGGA GAAGAAGAAT CCGAACCTCC AACTAAGAAG 
ATTAAGATGG ATAAAAACTC TGTTGGTGGT ACAAGTCTCT CAGCTTAAGG 
AGCTCTTTAG TTTTTCCAAA CAAACTTCCT TTCTGTGAAG TGCATTGCGA 
CTTATCATTT TTATTTTAAA ACTTATCAGA AATTGCTCGA ATCTTTTTTT 
CCCGTTAGAT ATTGATTCAA CATTACTACA ACATATTACT CTAAAATTTC 
GTGGTCAGTG AGAGTGACCA CAACAAATTC TCTATAAACT AATATTATCG 
AGAAGTTAAT GAACTGTCAT TGGTCTGATA TTACAGAGAT TTTACTATAC 
ACACCATT

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 24584307 [Map]; Strand: c
  - AT1G66040.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
    Distance: 0; Region: intron7 (CDS)
2. Chromosome: 1; Position: 24592126 [Map]; Strand: w
  - AT1G66050.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
    Distance: 0; Region: intron7 (CDS)
Flanking Genome Sequence: 15-1393-1 - 3-prime edge
```
GTCACTGGAA GACTCAGCAC TTTCCGACAG ATTTGGCAAC TGAATT
```

AT1G66040.1

Model type: Protein coding
Short Description: Zinc finger (C3HC4-type RING finger) family protein
Curator Summary: predicted to encode a protein with an N-terminal PHD domain and two RING domains surrounding an SRA domain. Attempts to isolate ORTH4/VIM4 cDNA through RT-PCR were unsuccessful and analysis of the expression of this gene is difficult since it shares 99% nucleotide identity with ORTH5/VIM2.
Computational Description: VARIANT IN METHYLATION 4 (VIM4); FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G66050.1); Has 6297 Blast hits to 5041 proteins in 427 species: Archae - 0; Bacteria - 14; Metazoa - 4562; Fungi - 413; Plants - 874; Viruses - 19; Other Eukaryotes - 415 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G66050.1

Model type: Protein coding
Short Description: Zinc finger (C3HC4-type RING finger) family protein
Curator Summary: Encodes a protein that is similar to VIM1 but is not involved in cytosine methylation. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. ORTH5/VIM2 has E3 ubiquitin ligase activity in vitro.
Computational Description: VARIANT IN METHYLATION 2 (VIM2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G66040.1); Has 6271 Blast hits to 5010 proteins in 428 species: Archae - 0; Bacteria - 14; Metazoa - 4526; Fungi - 407; Plants - 903; Viruses - 19; Other Eukaryotes - 402 (source: NCBI BLink).
Link: InterPro Scan - TAIR