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15-1438-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 222364 [Map]; Strand: c
      • AT4G00490.1 - [+] show detail - beta-amylase 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 15-1438-1 - 5-prime edge 
    AACCTAATCG CCATCACTAA ACCAAAATTA TCTCAAATTC AGTTAAATTT 
    GGATTTTCGT GGAATGTGAA ATCAAAAGCC ACGTGAAGGC TTATTCATGG 
    GATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 222480 [Map]; Strand: c
      • AT4G00490.1 - [+] show detail - beta-amylase 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-1438-1 - 3-prime edge 
    ATTAGGTTGA ATCATAGTGT AATTCCAGTG AGCGTGAAGC T

AT4G00490.1

Model type
Protein coding
Short Description
beta-amylase 2
Curator Summary
Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.
Computational Description
beta-amylase 2 (BAM2); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 836 Blast hits to 835 proteins in 165 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR