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15-1440-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9516759 [Map]; Strand: c
      • AT4G16900.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: -218; Region: promoter
      • AT4G16915.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-1440-1 - 5-prime edge 
    GGGATAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCG ATGGAGGAAA AGAAGCTAAT TTATTATTGT 
    ACCATTTATG TCTCAACTGT TACCATACTC CCTACTCTTC TAGTCTAAAA 
    AGTACCTTTG TACAGTAAGT ATCTATTACT GACCTTCCGG GAAAGGAAGG 
    AAGATAAAGT TTCTCCTCTT TTCTCTCTCT CTCTCTCACG TAATCAATAT 
    GCATTGCTGA TCTTTTTCTT TTCTCTCTCA TCATCTTCCA TGGCGACGGC 
    TTCTTCTTAT GGCAGCCGGA GATACGACGT TTTCCCAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9499810 [Map]; Strand: c
      • AT4G16880.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: -2497; Region: intergenic
      • AT4G16890.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class), putative
        Distance: 696; Region: intergenic
    Flanking Genome Sequence: 15-1440-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTTANTGC 
    NATTNATNTT GAANAANATT GGCATAGCAG ACGAGCTGTT AAGGAACTNN 
    ACANCTGGCC CTCTNCTATG ACTATANTNA AAGAGTGCAG CGGCATGGGG 
    GAACAGCAGC GACATGTTTT CTCATCGACG TAGGATAGCN TGGATGATAC 
    TTTCATGGTT TGGAAGTGGA CCAGACAATG TCTACTGCAG GAAGTTAATA 
    AGCTCTTTCC TTCACCCGAA GGGTTGTTCC AGCTTTGGCC GAAGTTAAGC 
    CAAAAACGCT TCCGCCCTTT GGCTATTGAA TCAGCGGATA TGCAAATGTT 
    GCTGATGACG AGTGACTTGC TATGTAAAAT ATTTCCAACA CATTCTTGTT 
    GTTTTCTGTA CCCAAAGTCT GATTTATTCA TTGCTAATAA AGAGAAAAAC 
    AACCTTTACT AACATAAACA TTGAGATCTA TGTTTTAAAA ATGGCAAGAC 
    TATTTTGGTA CAATACAAAA CCATGCCAAA GATGTAAACC CCGTAGGTAC 
    GCTCACAAAT TCAATGTCTT TTCAATTAAA AATAGATAGA TGTATCATGT 
    ATGGTACAAT ACAAAACCAT GCCAAAGATG TTTTTCCAGA ATATGCTAAA 
    AGTGTGGCTT TTTTGAAACA TTTATTCTTT CAGGAAAAGC GAAATGTTCA 
    AAACAAACNC AGAGTTGGAG AATT

AT4G16880.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 2574 Blast hits to 2178 proteins in 46 species: Archae - 0; Bacteria - 11; Metazoa - 1; Fungi - 0; Plants - 2558; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16890.1

Model type
Protein coding
Short Description
disease resistance protein (TIR-NBS-LRR class), putative
Curator Summary
Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.
Computational Description
SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 (SNC1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to auxin stimulus, defense response to bacterium, incompatible interaction, defense response, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 42615 Blast hits to 22768 proteins in 878 species: Archae - 40; Bacteria - 3631; Metazoa - 4485; Fungi - 289; Plants - 31985; Viruses - 14; Other Eukaryotes - 2171 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16900.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16915.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).
Link
InterPro Scan - TAIR