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15-1470-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2394316 [Map]; Strand: c
      • AT1G07720.1 - [+] show detail - 3-ketoacyl-CoA synthase 3
        Distance: -1863; Region: intergenic
      • AT1G07725.1 - [+] show detail - exocyst subunit exo70 family protein H6
        Distance: 485; Region: intergenic
    Flanking Genome Sequence: 15-1470-1 - 3-prime edge
    NTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    NAANGTCACN CAGANNCGCG GNGGNNCTAT CCGGATCGCA GGCAAACATC
    TGGACANAAA GAAGTAGTAT GTNGAGATGT NAACCTTTTT TCAATANAAN
    TTGAANNTAA CATGTGCATG TTGCCACGTG AAAAATTTAA GGAAATGGCA
    GATACATCGT GGGAAAACTG GTATACGTCT CCTACGTTTG CATACAGAAT
    ACTAAAATAA ATCCATCATC ATTAAAGACT TGCTCATCTA ACTACTTAAC
    TTCCAACCAC AATTCTTTTT ATTTTCCTGC GACGAATCAT GGCCTTTTTT
    AGCAACGAGC CATATTATTT TGTCGGTCAT CTATCATATG ATTTATCTAT
    TTAATTTTAC AAAAAAGTCA ATGGAGTACT TTTTTTCTTT CATTTTTGTA
    AAAATATGTT TGTTTCAACA AATATATACT CAATTCAAAT CCGCCTGCAT
    GCATAGGCCA TAGCTAACCA TAATAACATT ATCAAAGTAA CGAAAAATAT
    AAAACAAGTC ATTTGCTTTA CTATTGTGCA TGACTGTTTC TCCATTCGAT
    TGCCAAACAA AATTTAAAAC TATTAGTCAC AAAAACGCAT AAATCCGAAC
    CAAACTGAAT CCTAAAATAA ACTAAAACTA CAAGGGAACT AAACCCTACA
    CGTTATGGGT TTGAGAANAA AAAGGTTAAC AAAAGATTAT AAAGANAATG
    GATTNGGCGG AGTG

AT1G07720.1

Model type
Protein coding
Short Description
3-ketoacyl-CoA synthase 3
Curator Summary
Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational Description
3-ketoacyl-CoA synthase 3 (KCS3); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: response to cold, response to light stimulus, response to osmotic stress; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 12 (TAIR:AT2G28630.1); Has 2897 Blast hits to 2863 proteins in 795 species: Archae - 0; Bacteria - 1421; Metazoa - 0; Fungi - 2; Plants - 1311; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G07725.1

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H6
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H6 (EXO70H6); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H5 (TAIR:AT2G28640.1); Has 846 Blast hits to 838 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 47; Plants - 645; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR