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15-1524-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3954105 [Map]; Strand: c
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -3503; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 3077; Region: intergenic
    Flanking Genome Sequence: 15-1524-1 - 5-prime edge
    CTTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC GGGCGTGGGG AATGAGAGTG AGTATAACTA
    CTATGAGGAT AACANGAATT ACCGGNATNN NANGCTNAAC TATGGGACGN
    TTNTTNACCG TCCGACTCCG ACGANNATGT TGTGNTNTAC NGGNACTTNN
    NCCNNACATA TACNATANTN ANAGGGAATA TTAGATGNCG ATCNCNANNC
    ACTACATNAG NNNTAGNTGT ACNTGCTNNN TCNACTATCC TATCTATGTN
    NATANATATA GGNTTGCGNG GCNTNAGANA NCTTCCACAA TAATTCCTTT
    NGGATTAANT NGATGCTAAC TTTCTATACT TTTTCATGAA TCTAGGAAGA
    TCTTACACAG TANTACCAAA ACACAACCNA NAGAGNGTAG AACTGTCACC
    ATACCCACTT NGATGAATAA AAGCTTTGAN AANCAANAAN AAGGTTGGTG
    NGTGTTTTGG AGTCGAATAT GACTNGANCT CNTGTGTATG ATTGAGAATA
    AGAACTTAAA CCGCAACCGC ATCATATAAG CCTAAATAGT GTTTCCTTGT
    TNGAAGACAC AAAGCCAAAG ACTCATTNGG ACTTTGGCTA CAACATGAAA
    GCTACCANCC CGGNCCGTCN ACCACGCGGC NCCTATANNN NNAAANNCAN
    NNTGNCNANG NTCNNNNGNN CCAGGNNNNN NNNCCAGCNN GNCCCACANC
    GANCTACNCN CGNCNTGT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 46776 [Map]; Strand: c
      • AT3G01140.1 - [+] show detail - myb domain protein 106
        Distance: 0; Region: exon5 (CDS)
      • AT3G01142.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 15-1524-1 - 3-prime edge
    CACGCCCGCC GTCGCTTCGT TTTTCCCAGT GGGTAAACCC CGGCCGACCG 
    AATCACCGAT CAATAGACTC GTGAATCCTT CTCCTATTCC TCCACTACCA
    CAGTTGATCT GCCTAATCCA GTCGTGTTCG TGTTCTTTGA CCAGACTCAC
    ATCGGAGGAG GTTGACGAAG ATACGGCGAG TTCAATCATC GCCGAGGACT
    CATTGTTGTT ATTGTTTCTA TTTCTTCTGC TATCCGTAGG GATTCCTAAA
    GGCATCAGAA GATTCTCGGA GAATGTCACC GTCGATGTCG GAGATTCAAG
    CTGTTGGTCT CCGTTTCCTG TCACAATTTT CCATTGATAC GTTACCAAAA
    CCAATCAAAG TTGAGAGTTT TTTTTAAGAC GATGTGTCCC TTACCTTGGT
    TTGGTTTAGT CCAGTTTGTT GATGTTTTTT GAGTGAAGCA ATGTTGTTGA
    GGAGCTGCTG ATTTGTTAAG GTTGTTATTG TTTTGGTAAT GCTGTAAATG
    GAGAAGCT

AT3G01140.1

Model type
Protein coding
Short Description
myb domain protein 106
Curator Summary
Encodes a MIXTA-like MYB gene NOECK (NOK). Loss of function mutations show an increased number of branchpoints in leaf trichomes suggesting a role in negative regulation of trichome branching.
Computational Description
myb domain protein 106 (MYB106); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: trichome branching, regulation of transcription, DNA-dependent; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 16 (TAIR:AT5G15310.1); Has 8850 Blast hits to 8247 proteins in 477 species: Archae - 0; Bacteria - 0; Metazoa - 708; Fungi - 505; Plants - 5831; Viruses - 3; Other Eukaryotes - 1803 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01142.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G01140
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR