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15-1527-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3952190 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1588; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4992; Region: intergenic
    2. Chromosome: 4; Position: 3954325 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -3723; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 2857; Region: intergenic
    Flanking Genome Sequence: 15-1527-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT NGGNNGANCA GANNCCANNN CATNATNGNA 
    CCNTNTATGT NCNNGCGTGN AACCATACTG CCTACTCTNC TAGCCTAACA 
    AAGTACGTTT GTACAGTAAG TATCTATTAC ATGACCTTCC GGGAAAGGAA 
    GGAAGATAAA GTTTCTCCTC TTTTCTCTCT CTCTCTCTCA CTAATCAATA 
    TGCATTGCTG ATCTTTTTCT TTTCTCTCTC ATCATCTTCC ATGGCGACGG 
    CTTCTTCTTA TGGNAGCCGG AGATACGACG TTTTCCCAAG CTTTCATGGT 
    GTAGCCAAAG TCCAAATGAG TCTTTGGCTN NGTGTCTTCT AACAAGGAAA 
    CACTACTTAG GCTTATAANA TCGGGNNGCG GTNAAAGNTN TTATACTNAN 
    TCATACACAT GACATNAACT AATATTCGAC TCNAANACAC TAACCAACCT 
    TCTTCTTGCT TNTNNNAGCT ANCANCGGGG NCCGCATACC ACGGNNGNCN 
    TAAAGANNTN GNGANNATAT NGNANAANAN NNNNNANNNN NAANNNNNNN 
    ANGAACNTNA NNANNNTNNN NANGAANGGN GANGNNCNCN TNNNNACNTG 
    CTNNNNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 346653 [Map]; Strand: w
      • AT1G02000.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-1527-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
    TGGAGGNNNA CGAAACCACC GGATGTNGCT GNGANCNTAG TGAGCCGGGG 
    TTNTCCATGG CGTATCTGAC ACCAGCTTGA GCGGCAAGAT GCATGACGTG 
    AGTGAAAGGG ACGACCTCGA AGAGCTTCTT GAGGAGAGAC AGATCGTTGA 
    TGTCTCCTTC AACGATGAAC ACTCCGCTTC TCTCGAGGAG GGCTTGTCGA 
    GATCTCTTGA GAGAGGTGTC GTAGTAATCG TTGAAGTTGT CGAGGCCTAG 
    AACGCCGTCG CCGCGTCGTT TAAGAGCGGC AGAGACGTGA GTCCCGACGA 
    AACCGGCGGC CCCGGTGACG AGAACGGAGA CGCCGTTGCG GGTGCGGACA 
    CGAGCGGAGG ATCGGACGCG TTTCTCCCAG GCGGGACCGC CCCAAGAGTA 
    GGTGCGAAGA GAGCGGCGAG AGGAATCGGG ATTGGAGATG GGAGATCGGT 
    AGAAGAAGAT GAAGAGCAAT CCGAAAAAGA CAAGGGACCA AAAGGCAAGC 
    T

AT1G02000.1

Model type
Protein coding
Short Description
UDP-D-glucuronate 4-epimerase 2
Curator Summary
UDP-D-glucuronate 4-epimerase
Computational Description
UDP-D-glucuronate 4-epimerase 2 (GAE2); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 3 (TAIR:AT4G00110.1); Has 43438 Blast hits to 43429 proteins in 2985 species: Archae - 785; Bacteria - 25993; Metazoa - 728; Fungi - 385; Plants - 1220; Viruses - 41; Other Eukaryotes - 14286 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR