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15-1578-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3523392 [Map]; Strand: c
      • AT1G10640.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -5504; Region: intergenic
      • AT1G10650.1 - [+] show detail - SBP (S-ribonuclease binding protein) family protein
        Distance: 626; Region: intergenic
    Flanking Genome Sequence: 15-1578-1 - 5-prime edge 
    AATGCACAAC GAAACCTTGT TTAGGGAGAA CCAGAGCCAG CTTTGAATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3523508 [Map]; Strand: c
      • AT1G10640.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -5620; Region: intergenic
      • AT1G10650.1 - [+] show detail - SBP (S-ribonuclease binding protein) family protein
        Distance: 510; Region: intergenic
    Flanking Genome Sequence: 15-1578-1 - 3-prime edge 
    TGTGCATTGA ACAAATTGAT TTCGGACACG TTTGATTTGA GACAACTTCA 
    TCTCTGTCCG AGACGCAGTA TTTCCGGTTT TAATTGGCTA TTT

AT1G10640.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G60590.1); Has 4327 Blast hits to 4306 proteins in 507 species: Archae - 6; Bacteria - 1323; Metazoa - 14; Fungi - 1302; Plants - 1545; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10650.1

Model type
Protein coding
Short Description
SBP (S-ribonuclease binding protein) family protein
Computational Description
SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G60610.3); Has 1212 Blast hits to 1212 proteins in 167 species: Archae - 0; Bacteria - 2; Metazoa - 524; Fungi - 0; Plants - 416; Viruses - 105; Other Eukaryotes - 165 (source: NCBI BLink).
Link
InterPro Scan - TAIR