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15-1761-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29760474 [Map]; Strand: c
      • AT1G79110.2 - [+] show detail - zinc ion binding
        Distance: 0; Region: exon3 (CDS)
      • AT1G79110.1 - [+] show detail - zinc ion binding
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 15-1761-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CAGCAACACA CACGATTCCT CCTCCCCACA 
    GTTTCTACAC ATCCTCCTCC TCCTCCTCTC CGCCTTATCC TGCGCCTCCC 
    TTCCTAATCC TACCCTGCGC CTTACCGTTT CTTCACCACC ACCACCACAG 
    CTGCTTCCGC AGCACGACTC CGCATCGTCC TCTTCGTTCA TGTTATTCTC 
    TAATCCTGCG CCGCGTGATA CGTCCTTAAC CTGCGCCAGA ACATGCTCGA

AT1G79110.1

Model type
Protein coding
Short Description
zinc ion binding
Computational Description
zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT3G12920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79110.2

Model type
Protein coding
Short Description
zinc ion binding
Computational Description
zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT3G12920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR