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15-1800-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3616950 [Map]; Strand: c
      • AT1G10865.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -791; Region: promoter
      • AT1G10865.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -795; Region: promoter
      • AT1G10870.1 - [+] show detail - ARF-GAP domain 4
        Distance: 0; Region: exon19 (CDS)
    Flanking Genome Sequence: 15-1800-1 - 5-prime edge 
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCGC CGATAACTGA TGAAGAGCTC TTTCTTCTCT 
    TAGCCGAGTG CGCATAAACC TTCACTGCAC ACCGACATGC ACAGCTTCTT 
    TAGAAACACC TTTGGAAGAC CCTAAAACGC AAAACAAGGA GGTGGTACAA 
    GCTACTAGAT TCCGTAAAGG CATGATGAAA CAGCCTTTTG AGTCGTTGTT 
    TGTCAATGTA CAAGGGATAT GATTTTACTG ACCTACAGTT TATCTCTACT 
    CACTTTTCAA GTTTCGGAAG TTTTGATTTT TTTTTTNAAA CTTNANTTTN 
    GCNTTNACNT TNGAGTTTTA CATNTNAAAA ANAATTTCAA TAAACNTCNT 
    TNTTAANTNT NCAAAAAAAA AAAANNGGNA AAANNTTTTT TNNNAANNAA 
    NGGGGNNNAN TTTTTTTTTT TNAANGGNTT NNAAAAAANN NNTNNNNNCN 
    NAAAAAATTN NNTTAAAAAN AAAAAAAAGG GGGNNNGGGN AAAAAAANCC 
    NNNNAANNTT TTNNGGCCCN AAAATTTTTT TTNAAAAGGG GGGGGGGNCC 
    CCCCCCCCCC CNNAAAAAAA AAAAAAAANC CCCNNCCCCC CGNNGGGGTN 
    AAAATNTTTT TNCCCCNNCC CNANCCGGGN NNAAGGGGGG NAAATTTTNG 
    TTTTTNNNCC CCCTTTTTTT TNNAANCCNC CCNNNCCNAN TTTTTTTGNN 
    TTTTNCCCGN GNTNTTTNTT TAANCCNCNC CAANNNGGGN NGGCNC

AT1G10865.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 241 Blast hits to 241 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 94; Plants - 38; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10865.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G10870.1

Model type
Protein coding
Short Description
ARF-GAP domain 4
Curator Summary
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD4 belongs to the Class 1, together with AGD1, AGD2, and AGD3.
Computational Description
ARF-GAP domain 4 (AGD4); FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), Pleckstrin homology-type (InterPro:IPR011993), Ankyrin repeat-containing domain (InterPro:IPR020683), BAR (InterPro:IPR004148), Pleckstrin homology (InterPro:IPR001849), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 2 (TAIR:AT1G60860.1); Has 23403 Blast hits to 15248 proteins in 655 species: Archae - 77; Bacteria - 1735; Metazoa - 12296; Fungi - 2244; Plants - 1395; Viruses - 252; Other Eukaryotes - 5404 (source: NCBI BLink).
Link
InterPro Scan - TAIR