1. Home
  2. Mutant Lines
  3. 15-1806-1

15-1806-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8779442 [Map]; Strand: c
      • AT1G24880.1 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron3 (CDS)
    2. Chromosome: 1; Position: 8801970 [Map]; Strand: c
      • AT1G25054.1 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron3 (CDS)
      • AT1G25054.2 - [+] show detail - UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
        Distance: 0; Region: intron2 (5UTR)
    3. Chromosome: 1; Position: 8816348 [Map]; Strand: c
      • AT1G25112.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 386; Region: intergenic
      • AT1G25141.1 - [+] show detail - F-box associated ubiquitination effector family protein
        Distance: -1330; Region: intergenic
    4. Chromosome: 1; Position: 8830726 [Map]; Strand: c
    Flanking Genome Sequence: 15-1806-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
    TCGTGCATCA ACAGCTACCA TAAACTATTA ATTGTAGTGA GTAAGTGGAC 
    TTTAGATTCA TATAGAGTTA TGCGATTCGG TTGAACGTAT CATACGAATC 
    TCAGTGTCTA CCTAATTAAT ACACATATAA TGCAAAAAGA ACAAACGCAT 
    ACTATAGATG ATAAGACGTG ATTGGACACA TTAAACACAT AGTTTACGGC 
    ATTACATAAA CCGATACACA TAATTAATTA CGTGTTACTT CTGTGGCGTG 
    TAGTAGAAAG ACTAGCTGCA TATGGCACCT AATTAATACT CATATATGGT 
    TCATGCGAAA TGCTGATATG TATAAGGTAA TATATACCAC CACTTTGGTA 
    CCACAATGCA ACATCTAAAT TCGATTATGA TAAGCTATGA TAAGCTATCT 
    TCTCAATATC AATTAATCGC TTCTTTATTC TAATACCACT CCTTAATATA 
    TGCCTATCAT ATCATTATTT CACAACGCAT GTTTACTTTT GTTATGAAAT 
    AGTTTTGTTT AAAGGGTGGT AACGTAATTT ATGGGTTCCA TTAGGATTGT 
    GATTTATTTT CTCTCCTCAT CCTTATGCAT GTAAGAATTT GCATTTTTAT 
    AAATATATAC TATGAATTT

AT1G24880.1

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G25054.1); Has 5321 Blast hits to 5321 proteins in 1417 species: Archae - 0; Bacteria - 2995; Metazoa - 1; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25054.1

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 5320 Blast hits to 5320 proteins in 1417 species: Archae - 0; Bacteria - 2992; Metazoa - 1; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25054.2

Model type
Protein coding
Short Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
Computational Description
UDP-3-O-acyl N-acetylglycosamine deacetylase family protein; FUNCTIONS IN: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN: lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s: UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro:IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro:IPR004463), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro:IPR011334); BEST Arabidopsis thaliana protein match is: UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (TAIR:AT1G24880.1); Has 5321 Blast hits to 5321 proteins in 1417 species: Archae - 0; Bacteria - 2995; Metazoa - 1; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25112.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25025.1); Has 8171 Blast hits to 2608 proteins in 364 species: Archae - 0; Bacteria - 499; Metazoa - 1710; Fungi - 974; Plants - 287; Viruses - 83; Other Eukaryotes - 4618 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25141.1

Model type
Protein coding
Short Description
F-box associated ubiquitination effector family protein
Computational Description
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT5G47300.1); Has 7236 Blast hits to 6390 proteins in 1409 species: Archae - 0; Bacteria - 2915; Metazoa - 1; Fungi - 0; Plants - 2305; Viruses - 0; Other Eukaryotes - 2015 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G25209.1

Model type
Pseudogene
Curator Summary
pseudogene of UDP-3-O-acyl N-acetylglucosamine deacetylase family protein/F-box protein related
Link
InterPro Scan - TAIR