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15-1817-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16394347 [Map]; Strand: w
      • AT4G34250.1 - [+] show detail - 3-ketoacyl-CoA synthase 16
        Distance: -361; Region: promoter
    Flanking Genome Sequence: 15-1817-1 - 5-prime edge 
    CTTNGATAAA ACTAACAAAA TCGGTTATAC GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTCATC CGTTATCTGG TTTGCGTGAT CCGTGTATCC 
    CCCCTAAACC GGTATATTGG TTTGGTTACA TTGATATTGA TTTTTCATTT 
    GAATCCTTTT TTTTTAACAT TGATTTTATG ATTCGTTATA NATGAAAATG 
    AATTTATTAT TCCCAACAAT GCATATGCCC TAAAATTTCT ANATACCTAA 
    TCTGGTTANA AACTTGCAAA CTTTGGTTAG GTCGTCGTTA TCCAAAGAAG 
    AAAATATCAC AAGAAATCAT TCATGTTTTT GCTTATTTAT TGCTATCATA 
    CATTCATTGC ATGCATGTAG GGGACTCTCT CTCTCTTCTT CTCGACTCTC 
    TGACTCAATC AACCTCTATA AATGTAAAAC GAGTCANAAG GAACAAAGAC 
    NCACATCAAG AATTTAAATC ACTAAAATGG ATTACCCCAT GAANAAGGTA 
    AAAATCTTTT TCAACTACCT CATGGCGCAT CGCTTCAAGC TCTGCTTCTT 
    ACCATTAATG GTTGCTATAG CCGNGGAGGC GTCTCGTNTT TCCACACAAG 
    ATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16394303 [Map]; Strand: w
      • AT4G34250.1 - [+] show detail - 3-ketoacyl-CoA synthase 16
        Distance: -405; Region: promoter
    Flanking Genome Sequence: 15-1817-1 - 3-prime edge 
    GATCATAACC GGCTNCGNNG GTGCTAAGNG CGTACCACAG ACCACGGATG 
    GTCCNAGCCA TGTGGAGACA TATACGTATT GAAGTTTTGA ATATAAATAT 
    GGATGGAGAC ACTTTGGCGT TTATCAGTTC ACTCTCAACA ACGAATAGAT 
    GCATGCNGTG GTCACNTGAC AATGCTTTTA GCCAACCCGA CCCAACTAGT 
    TGGATTATCC GGTAAATGAT ATCATAAATC GACAGAAAAC TCACAAAAAA 
    TGATCAAAAT TTACCACTTT TAATTAGAAA AATAAATATT AACAACTTAT 
    GATGGTAGAG TGGTTCGAAA TTCACTATGT TAGTTGAGAT TTTAGTTATG 
    GTGTATGCAC AAAAGTATTG GACATCACAA CTACATATCG ATCTTAAGAC 
    ATTGACAAAC TAGTTATAAA ATATGCTGCT GCTTCTCTTG ATAACATTTG 
    TCATTCTTTA TAAATAATGC TAGAAAATGA TAAATGCGAG AAAACAAACA 
    TGTGCATTTC TCAAATCAGA AACGAAATTG ACGCANCACT CAAGGTAGTA 
    AATGCGAAGT AAAACAAACA ACNCACCTAT TTTCTTACTC ATATCCCATA 
    AAATTCGCAT CATTTTGCTT CAGANGANTT CANGGACTAT TAAGGCCTAT 
    GCCAGGGTAA CTTGGGCTTT AACCTTTTTA AGTNACACAG NACATTCTCN 
    TTACCTAACA AAAAATCNAT CAATCTTGGT ANTCTATTTT TATAANNNAA 
    NGA

AT4G34250.1

Model type
Protein coding
Short Description
3-ketoacyl-CoA synthase 16
Curator Summary
Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational Description
3-ketoacyl-CoA synthase 16 (KCS16); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: fatty acid elongation, response to light stimulus, very long-chain fatty acid metabolic process, response to osmotic stress; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 8 (TAIR:AT2G15090.1); Has 4922 Blast hits to 4907 proteins in 1227 species: Archae - 0; Bacteria - 1689; Metazoa - 0; Fungi - 21; Plants - 3079; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).
Link
InterPro Scan - TAIR