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15-1848-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30315319 [Map]; Strand: w
      • AT1G80650.1 - [+] show detail - RNAse THREE-like protein 1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 15-1848-1 - 5-prime edge 
    ACTAGGAGAG GCTCAGCTAA ATCGGTGTTA CACGAAATGT GTGCTTCCAA 
    GCAGTTGGAG ACCTCCTGTT TATGAATGCT GCAATGTTGA TGGACCTTGC 
    CATTTGAGAT TGTAAGTAAA CATCTTCTAA CCTGCACNTT GCTTTTATTT 
    TTTGAGTCGC AATCTTTTTT GCATCAACTT GGTTTTTTGG TTCAGATTTA 
    CATACAAAGT TATGGTTGAG ATTAGAGATT CTTCAGGGAA AACTGTTTTG 
    GAGTGTTTTG GGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30315203 [Map]; Strand: w
      • AT1G80650.1 - [+] show detail - RNAse THREE-like protein 1
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 15-1848-1 - 3-prime edge 
    CTCCTAGTCT TAGATTCATC ATCTGGAACA CAAATTTCAG AACAAAATGA 
    CCAAAATTCT ATCTTCTATA CCAAAAATTG CAATCTCTGT TGGTTTCCGA 
    ACAAGTTTAC ATCATAATTA GCAAAAGAGG TGAAGAAAAA ATGAATGAAC 
    CTTTAGATAT GGGTTTGGTG GTGGTGGTGT GTTCTTCATC TGGTTTAGGA 
    GCAAGCGTCT TTTCTAGTGA AATGCTTCTT GTGCTGTTAG GATCACCAGC 
    CCNGNCCGAN AACNACGNAT NNNCTTTGTC TTCTTCTTCA AACTTGAAGT 
    CAGTCTTCTC TTGGAATCTC TGCATTCCCA CATTATGATG ATCTTGCGCC 
    ATTGGTTTCT AACAATTGAC AGAAGCAAAG TTGAGATATT TATTACTATT 
    AACCCATGAT ATAGCCAAAT CACAGAAGAA GAATCATCTA CAAATAGAAA 
    ACGCAGAGAT TGTTCTCTGT TTCAAACCCA AATGATCAAT TTTTTTGTTA 
    GCGAGAAAGA AGAGAATATG GTTGGAGTGA ATGAATATTT ACCATAGAGG 
    GAATAGAAGA AGGGTCGAGA GGAGGAATAT CTTTGAGACT GATGATGATC 
    GATCTTGACG GTTTTTTGGT TATCCGCTTC GTTTCCTGAT CCTCCATCTT 
    TCATATTACT ACTCGTNGNC TAATTCCGAG AGATATCTTT GGGAATCNAN 
    AAATTGAAAT TTTATCGATC ATC

AT1G80650.1

Model type
Protein coding
Short Description
RNAse THREE-like protein 1
Computational Description
RNAse THREE-like protein 1 (RTL1); FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: Double-stranded RNA-binding domain (DsRBD)-containing protein (TAIR:AT4G00420.1); Has 100 Blast hits to 100 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR