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15-1857-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23108816 [Map]; Strand: w
      • AT3G62470.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -305; Region: promoter
      • AT3G62475.1 - [+] show detail - transposable element gene
        Distance: -284; Region: promoter
    Flanking Genome Sequence: 15-1857-1 - 3-prime edge 
    CTCGGACGTT ACAATTGTAG TATCTCGCCG CTGCATTCTG GTTATTGATG 
    ATTGATGTTA CACTGATTGA CTCATCTTGA TTTTCAGTTA TGTAATATCC 
    ATAAACACGT ATACAAAGAT AACGTGAACT AAGAGAAATG TATGATAGAA 
    TCAAATAAAT CTGAAAATAA ATTGGTCCCC TAAAAAAAAC TTGAGAAAAT 
    ATCACGACCC TAAAACGAAG ATAAGATGCA TACAGATAAC TTCCAACTAA 
    AAAAAGAAAT TGACACCTTT GATGATTATG CGTTTGCGCT TTAATGCTCC 
    TGGNGGACCC AATGGTTATA TGTAACCAGA TCAATGGGCC TTTAATGGGT 
    CAAAATTATT ATCACTCAAA GCT

AT3G62470.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 39079 Blast hits to 12185 proteins in 290 species: Archae - 4; Bacteria - 32; Metazoa - 449; Fungi - 607; Plants - 36694; Viruses - 0; Other Eukaryotes - 1293 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62475.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 2.3e-55 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)
Link
InterPro Scan - TAIR