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15-1868-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1163864 [Map]; Strand: w
      • AT5G04230.2 - [+] show detail - phenyl alanine ammonia-lyase 3
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 15-1868-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TCGTGTGGTT GTGGTGGTTC GGTTATGGGT CAATCTTGTT 
    AAACATATCT TTGATCTTCT TATTTTACAG TTTTACAATT ACCGAAAATT 
    TATTCATCTT TGATAATCTT CTCATACTAC TTTTACCAAA AAAAAAAAAA 
    AAAAAAAANT TTTNNNNNNN AAAAAAAAAA NNNNNNNNAA AAANNANCCN 
    NAAAANCNNN CCNAANNNNA AAAAANTNAA ANCCCCTTTT TTTTTNNNCC 
    NAAAANCCNA ANTTNNTTNA AAAAAAAANT GNNNNNNNNT TTTTTTTTTC 
    NCCCCCNNNC NAAAAANNTT NTTNNAAAAA ANCCCCNNNC CNTTTTNAAA 
    AAAAAANAAA AANCCCCNTT NNNGGGGGGG GNAAAAAAAA AAAAAAAAAA 
    NCCCCGGGGG GGGGNNCCNA AAAAANCGNN GGGGNCCAAN CCCCCNAAAA 
    AAAAATTNAN NCCNAANNCC NAAAACCCCC TTNNNAAAAN TTNNGNANCC 
    NNAGGGGNCC CCCCCCNNCC CCAAAAAANG GGGGAAAAAA ANTCCCCNNA 
    AAAANTNGGG GGTTTTTTTT TTCCCCCCCC CNTTTTTTNN NGGGGGGAAA 
    NNCNTTTTNG GGNNAAAACN ANGGGGCNCC CNAAAANNTN TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1163855 [Map]; Strand: w
      • AT5G04230.2 - [+] show detail - phenyl alanine ammonia-lyase 3
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 15-1868-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    CACGACATAA TCATAAAAGA AACAGAACGT TTGAACCAAA AAAAAAANCN 
    GGACNTTTTT GAAANGGCNA AGGCAAAACA ATTNCTNCCC ANCCAAATTT 
    TTTCAAANGG GGNGTTTNTT CTCNATNTNT GGANATNTGA CAAANCNTTT 
    TACCAAATAA AAATNGGANC CCCGTNCCNN TTTTTCAAAC TTTCAANCAN 
    AGGATNTNTN ANTTTTCCTT GAAATNTACC CCTGAAAACT TTGTNAAAAT 
    CCTTTCCCGG GGACCNAACN TCCTTTCCGG TTANCANCCT CNTTTCNNGT 
    TCNTTCCGCN CAANCCGGTN CAGGGGNTNC AATCNACNCT TTTTGNTTCG 
    GTTANCCNCN TTAAANGTNC CGTTCTCGNN CTNTGNCCTG ACTCGTNCCA 
    CTTTTTTAGG GNGGAAAANT TTNANNTNGG CCTCAAACNC TCCNNTTTTC 
    CAAAAAACCG NGTNGGNCTC CCCTTCCGGT TNAGNTAAAG NTACCANCCN 
    GGGCCGTNAA CCACCNGNCC CTTNAAA

AT5G04230.2

Model type
Protein coding
Short Description
phenyl alanine ammonia-lyase 3
Curator Summary
Member of Phenylalanine ammonialyase (PAL) gene family. Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genes. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).
Computational Description
phenyl alanine ammonia-lyase 3 (PAL3); FUNCTIONS IN: phenylalanine ammonia-lyase activity; INVOLVED IN: response to wounding, defense response; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: phenylalanine ammonia-lyase 4 (TAIR:AT3G10340.1).
Link
InterPro Scan - TAIR