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15-1869-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1763403 [Map]; Strand: w
      • AT5G05850.1 - [+] show detail - plant intracellular ras group-related LRR 1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-1869-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTTG 
    TGGGTAAGTG TTTTTTATCT TTAAAGGTTG ACTCTGTTTC CTCTGTTTTT 
    TCTTACTTCT GTTTTTTTTA TTTATTTAAA GATCGTTGGT TGTCTTGGAT 
    GCGAGCTACA ACAATCTCAC CTACTTACCA ACAAACATCG GATTCGAGCT 
    AGTGAAACTA GAGAAGCTCT TGATCCATCT CAACAAAATC AGATCATTAC 
    CAACTTCCAT TGGTGAAATG AGATCCTTAC GCTACCTCGA TGCACACTTC 
    AACGAACTCA ATGGTCTCCC AAATTCTTTC GGGCTGCTCA CGAACCTCGA 
    GTACCTTAAC CTGAGCAGTA ACTTCAGCGA TCTCCAAGAT C

AT5G05850.1

Model type
Protein coding
Short Description
plant intracellular ras group-related LRR 1
Curator Summary
Encodes PIRL1, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen.
Computational Description
plant intracellular ras group-related LRR 1 (PIRL1); INVOLVED IN: microgametogenesis, pollen development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 9 (TAIR:AT3G11330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR