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15-1908-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9519288 [Map]; Strand: c
      • AT4G16920.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: 15-1908-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG CAGGGAGAAG CATCATCATC AACATCTCTA 
    GAGTGGGAAG CTTTGTGTGT TGATGATTAC ATGATAACTG AAGAACAAGA 
    TGAAGACATT CCTTTCTTGG ATCCTGTTTC TGGTAACNTG AAGCATCTTA 
    TCATTCTGTT TTGCTCTGTT TTAGGATAAC TTGGGATCGA CTATGACTAT 
    AATGATAATG ATAATTAACT GCAGATGATG AAGAGCTTTC GGAGAACCAA 
    AGTCCGTTGA ATTCTCCAAC TCTGCGTTTG TTTTGAACAT TTCGCTTTTC 
    CTGAAAGAAT AAATGTTTCA AAAAGCCACA CTTTAGCATA TTCTGGAAAA 
    ACATCTTTGG CATGGTTTTG TATTGTACCA TACATGATAC ATCTATCTAT 
    TTTTAATTGA AAAGACATTG AATTTGTGAG CGTACCTNCG GGGTTTACAT 
    CTTTGGCATG GNTTTGTATT GTNCCAAAAN ANNCTTGCCA TTTTTAAAAN 
    ATANANAANN AANCCNGGNC NNNNANCCCN CCCNNCCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9483230 [Map]; Strand: c
      • AT4G16855.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: 723; Region: intergenic
      • AT4G16870.1 - [+] show detail - transposable element gene
        Distance: 725; Region: intergenic
    Flanking Genome Sequence: 15-1908-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    TCCCGATGTC ATCTGCATTA TAAATCAAAC GATCGATTCT ATTATATAGT 
    CTGTCGCTAT GGTATAAAAC AAATCAAAAG GCTTACCCGC ATCCGCTTCT 
    TGCTTCTCGT AGTCTGTTGG TTGTGCTCTG TTTCTTGATA GACATACAAG 
    AGTCGTACAC CGCATTCTTT TATCCTATTG GAGCAACAAA ACTGAAACTC 
    CACATCTTTG AAAGTCAATT TAGATGGAAG ATC

AT4G16855.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16870.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR

AT4G16920.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2); Has 33072 Blast hits to 18315 proteins in 784 species: Archae - 24; Bacteria - 2125; Metazoa - 2462; Fungi - 169; Plants - 26873; Viruses - 34; Other Eukaryotes - 1385 (source: NCBI BLink).
Link
InterPro Scan - TAIR