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15-1970-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11800694 [Map]; Strand: w
      • AT1G32640.1 - [+] show detail - Basic helix-loop-helix (bHLH) DNA-binding family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-1970-1 - 5-prime edge 
    GCCGGAGAAA TCATACGACG GTTGCCAGAA TATAGCGTAG GTCCAACCTT 
    CGTGTGTTCC TTCAATCAAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11800578 [Map]; Strand: w
      • AT1G32640.1 - [+] show detail - Basic helix-loop-helix (bHLH) DNA-binding family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-1970-1 - 3-prime edge 
    TCTCCGGCGC CTCCGTGCTC GGATGGGGAG ATGGTTATTA CAAAGGTGAA 
    GAAGATAAAG CAAACCCGAG ACGGAGATCG AGTTCGCCGC CGTTTTCTAC 
    TCCGGCGGAT CAGGAGTACA GGAAAAAAGT GTTGAGAGAG CNTTAACTCG 
    TTGATCTCCG GTGGTGTTGC TCCGTCGGAT GACGCTGTTG ATGAGGAGGT 
    GACGGATACG GAATGGTTTT TCTTGGTTTC GATGACGCAG AGCTTCGCTT 
    GCGGTGCGGG ATTAGCTGGT AAAGCGTTTG CAACGGGTAA CGCGGTTTGG 
    GTTTCCGGGT CAGATCAATT ATCCGGGTCG GGTTGTGAAC GGGCTAAGCA 
    AGGAGGAGTG TTTGGGATGC ATACTATTGC GTGTATTCCT TCGGCGAACG 
    GAGTTGTGGA AGTCGGGTCA ACGGAGCCGA TCCGACAGAG TTCGGACCTT 
    ATTAACAAGG TTCGAATT

AT1G32640.1

Model type
Protein coding
Short Description
Basic helix-loop-helix (bHLH) DNA-binding family protein
Curator Summary
Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light
Computational Description
MYC2; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 13 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: Basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT4G17880.1); Has 4078 Blast hits to 3762 proteins in 672 species: Archae - 2; Bacteria - 2; Metazoa - 761; Fungi - 108; Plants - 3150; Viruses - 25; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR