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15-1973-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6039149 [Map]; Strand: w
      • AT1G17560.1 - [+] show detail - Ribosomal protein L14p/L23e family protein
        Distance: -457; Region: promoter
      • AT1G17580.1 - [+] show detail - myosin 1
        Distance: -154; Region: promoter
    Flanking Genome Sequence: 15-1973-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG TCATGCCGTC CATTTTGAAG CTAGCACTGG
    GACCCACTAG TAATCTGTAT CAGACAAGAG ACAAAATAAA ACCCCCCAAA
    TGGCTTCTCC AAGCGGAGCT CCAACGAAAC GCCTTTTTTT TTTAAACTCT
    CCNCCGGGAT AANANANANA NATTNCCAAA TTCTCNCCGG AAAAAAAAAA
    NGGGCTTTCC TTTCCTGAAA TTTCCGGGNA AAAGTCATNG ACTTTATNAC
    TCTNAAGTCT NTCCACAAGT NGATNGATTC TGCTCTAATC TCCTNATNNG
    GGGTCTTTCC CCTNTNGCTN TTNAAANGGN AAATTNAAAT NTNTCTNTAT
    NCCATTTTAT GTTTNTAAAA AATATCTNGG NCTNTTNGCT NAACNGTTTA
    TTNNAAAACN GAAAACCTNG CTNGTTNGTT NCGTNAANGT NGTNGTNGCG
    TTNGCTNGCT TNACCCCTTT TNGTTNCCTG TNNGGANACC CTAATTCTNG
    ATCTANGGNG GTTTTTACTT NTNAANGGTT TNGGTTTNAC TNTGTNTAGC
    TAAGTTNTAN AAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6018298 [Map]; Strand: c
      • AT1G17500.1 - [+] show detail - ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase famil...
        Distance: -459; Region: promoter
    Flanking Genome Sequence: 15-1973-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCGGTGAATT GTTCCACTTG ATCAACCTCT TCTCAGCCGT TTAACTTCTT
    GATTTAGGAA TTTTTGGACT ATCTTTTGCT GCTGGTTACT GCGTTTTCCT
    TCTTTTGNTT CTTCACATTT TGCTCGCAAT ATTCATTGGA TCAATCGGAA
    TT

AT1G17500.1

Model type
Protein coding
Short Description
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
Computational Description
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, ATP biosynthetic process, phospholipid transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G72700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G17560.1

Model type
Protein coding
Short Description
Ribosomal protein L14p/L23e family protein
Curator Summary
Mutant shows abnormal ovule development
Computational Description
HUELLENLOS (HLL); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14, bacterial-type (InterPro:IPR005745), Ribosomal protein L14b/L23e (InterPro:IPR000218), Ribosomal protein L14 conserved site (InterPro:IPR019972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT5G46160.2); Has 9401 Blast hits to 9401 proteins in 3194 species: Archae - 306; Bacteria - 5487; Metazoa - 280; Fungi - 278; Plants - 760; Viruses - 0; Other Eukaryotes - 2290 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G17580.1

Model type
Protein coding
Short Description
myosin 1
Curator Summary
Encodes a member of the type XI myosin protein family involved in organelle trafficking and overall plant development.
Computational Description
myosin 1 (MYA1); FUNCTIONS IN: motor activity; INVOLVED IN: in 8 processes; LOCATED IN: myosin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT5G20490.1); Has 18995 Blast hits to 13821 proteins in 1312 species: Archae - 114; Bacteria - 980; Metazoa - 11844; Fungi - 1348; Plants - 1046; Viruses - 13; Other Eukaryotes - 3650 (source: NCBI BLink).
Link
InterPro Scan - TAIR