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15-2037-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12045247 [Map]; Strand: w
      • AT1G33220.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-2037-1 - 5-prime edge 
    CTGTTAAGGG CTGGTTTGCA ATCAACATCG AGCCTTACTT AGCCGATGTC 
    AACATTGCAG TTCATTACTG TTGGTAATGA AGTCATCCCC GGACCAATCG 
    GTCCTCAAGT GCTTCCGGTC ATGCAGTCTC TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12045131 [Map]; Strand: w
      • AT1G33220.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-2037-1 - 3-prime edge 
    CTTAACAGCT TCTTCGTTAG CTGAAAGAGC ACCCAAGTCC TGGTCCCTCA 
    CGCCAACAGT GACTTCAATA TTACGGTGGC CGCGTAAGGC GTTAAGAACC 
    TCTGTGTTTG GGTCGAAGAT TCGGATTTTT GTAATGCCTA TGGACNTTGT 
    AAAGGTTGAG AACATTGGAT GGAGTTGGGA GGTTATCTCC GAGGAGGCCG 
    TAGTTCAAGC CTATGCTATT TGCTGCGGCT ACGAAGCCAC TAGTGTTATA 
    GTTGAAAGTC AGCATAATGC ACGAGAGGAA GAACAAGAAC AGCTTCTTAG 
    AGGAATAGAC CATGATGAAA CTTTTGTCTG CAAAATATAG CAAAAGATCG 
    TACTTGCTTG TAGAAGAGGA AGGAACAAAA ATTTGTTTCT TTATTTGTTT 
    TGTTACGTTG CAATATATAG GTTGCAAATG TGTGTATATA TTTATATAAC 
    TACATATCTG AGATCTATTT CCAGTATTAT TCTATCAATA TAATAGTAAA 
    ATTCTTTTAT TTTGGTTCTA TGTGTAATCT TAGCCGTCGA TCTATTTACA 
    AATTCGGTTT TTTCTTTTTT CACTAGTTAT ATTTATCTAC ACTTTTTTTT 
    CTTTTTTTGA AAGAATGTAA AATTTTATTC AATCAAAATC CTTTGTACAA 
    TGAATGCAAC CGTGTGTTGA GTGTTTAAAA GAAAAACAGN GGATNCAAAA 
    GCTGAATTGC AAAAGCNAAA GGTNCAAAAC CGA

AT1G33220.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 5 (TAIR:AT5G20340.1); Has 2095 Blast hits to 2083 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2086; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR