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15-2107-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19640800 [Map]; Strand: c
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G48010.1 - [+] show detail - receptor-like kinase in in flowers 3
        Distance: -577; Region: promoter
    Flanking Genome Sequence: 15-2107-1 - 5-prime edge 
    NGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TAGTCTCCAT GAAGAAGCGC ATGTGGAGAA TCTCACTGAT 
    TTCCCAGATA TCTGATCTGC TCTGCCTTTC CCGTGGCTCT TCTGCAACCT 
    TGAAGACTCT GACCCCATTC TGCTTTACCC TCTCCAGGTC TCCCTTCCAC 
    CAATCCGGGG GCGATGATGA TGCTTCGGGA TTGAAAAACC AATTGTTGCG 
    CTTCCGTAAT GATTCCGGTA AAGTTGCCTC CGTTTTGGAG AGGAACAAAA 
    TCCAAGGAGC TGCGTTTGTT GAGCTCCTTA GGCAGTTACG TCCATGGCCC 
    GTTTTGTCCC AACTGGTATA CATACATCTT TTTTGTCTTC GAATTTCACA 
    ACCACAAAAG AAAAAGCCTT TTTTCCGTCA TGTTTGATGT TGTTGCTTTG 
    CAGGTGTTCG ACTGGAGAAG AAACAAGGCA CTATGCGATG GGTTGCCTAT 
    GACTGCTGAT GAATACGCTA AGGGCATTAC CATTTCTGGT AGACTGAAGA 
    ATGTCGATTT GGCCCTTTCC TTGTTTCACG AGTCTGCAAA CAAGACCACC 
    TCCGTCTACA ATGCTTTGAT GGGTGCTTAC CTCTGCAACG GGTTTGTCTC 
    ATCATTGCGA GCAGCTCTTC CTTGACTTCA ATTCTCAACA AGACGGACCC 
    TCCTCTTCTA CTCCATCTGN CTCTACTTAC ACATCCTCAT TCTCTTTATG 
    GGCCGGTG

AT2G48000.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G30780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48010.1

Model type
Protein coding
Short Description
receptor-like kinase in in flowers 3
Curator Summary
receptor-like serine/threonine kinase (RKF3)
Computational Description
receptor-like kinase in in flowers 3 (RKF3); FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G11050.1); Has 112833 Blast hits to 111726 proteins in 4356 species: Archae - 97; Bacteria - 12546; Metazoa - 41926; Fungi - 9138; Plants - 32648; Viruses - 383; Other Eukaryotes - 16095 (source: NCBI BLink).
Link
InterPro Scan - TAIR