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15-2118-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16056540 [Map]; Strand: w
      • AT3G44410.1 - [+] show detail - pseudogene, disease resistence protein, putative, similar to disease resistan...
        Distance: -770; Region: promoter
      • AT3G44420.2 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 15-2118-1 - 5-prime edge 
    CTTGTGATCT GCAATACGAA TGCAGCGTGG AAGGACCACA GGTTTGGCTT 
    GGGTTTTCAA GAGATCTGAG ATCCAATTTG GAAAAGGATC AAAAGGGATT 
    CGAAATATTG GCTCGCCATT AATGGCGGAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26691688 [Map]; Strand: w
      • AT1G70770.2 - [+] show detail - Protein of unknown function DUF2359, transmembrane
        Distance: -413; Region: promoter
      • AT1G70770.1 - [+] show detail - Protein of unknown function DUF2359, transmembrane
        Distance: -411; Region: promoter
    Flanking Genome Sequence: 15-2118-1 - 3-prime edge 
    ATGCTAATGT NTCTAANNAT CTTAAAACAG GATANTTATN ATACTGTNAG 
    TGTCATCATT ATCATACATT NCACCAGAAG NTAACTGAAN GAATATGACT 
    ANCAACAAAG ATTTGANTTC TCTGAGAATA TTTGTTCCAA TCCAAAGTAA 
    AACCAANCAN AAAAATAGAA AATNTCTATA TTCACGGGNA AAAAATATAT 
    ATTNTAAAAA CAGAGGCTGT GATATTNTTT ACCCATCATT TCTAGAATNT 
    TGGGGAAATG CAAAACACTA ATNCATAAAA ATTNAAAANT AATTAAACTA 
    AAAGTAAAAC AAANCAAAAC CAAATCCCAA AGGATNGGTC CAAAATCTGT 
    GTTTACAANA ATATCAATGG CACATTTCGT AGTAAAGATA AAANACAAGG 
    ATATTGTTTN TAATCTTTCT ATTACCCTAT TATTCTCTTA TNTATATATA 
    CTCTTCCCTC CGGNCAAATC TCGNCGNCTT GTTNGGTCTC TGNTTTTCAC 
    GCCGGAGATA GAGAGAGAGA AGTAAAANAG CGANAAAAAG CTAGAAACTT 
    TANAATACCC AATACTGGAT C

AT1G70770.1

Model type
Protein coding
Short Description
Protein of unknown function DUF2359, transmembrane
Computational Description
Protein of unknown function DUF2359, transmembrane; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endoplasmic reticulum, nucleus, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2359, transmembrane (InterPro:IPR019308); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF2359, transmembrane (TAIR:AT1G23170.2); Has 190 Blast hits to 170 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 3; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70770.2

Model type
Protein coding
Short Description
Protein of unknown function DUF2359, transmembrane
Computational Description
Protein of unknown function DUF2359, transmembrane; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endoplasmic reticulum, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2359, transmembrane (InterPro:IPR019308); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF2359, transmembrane (TAIR:AT1G23170.2).
Link
InterPro Scan - TAIR

AT3G44410.1

Model type
Pseudogene
Computational Description
pseudogene, disease resistence protein, putative, similar to disease resistance protein RPP1-WsB (Arabidopsis thaliana) gi|3860165|gb|AAC72978
Link
InterPro Scan - TAIR

AT3G44420.2

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR