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15-2121-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 268539 [Map]; Strand: c
      • AT4G00630.2 - [+] show detail - K+ efflux antiporter 2
        Distance: -508; Region: promoter
      • AT4G00630.1 - [+] show detail - K+ efflux antiporter 2
        Distance: -489; Region: promoter
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: -487; Region: promoter
    Flanking Genome Sequence: 15-2121-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG TGATGGTGTG CTCTTTTTAG TCTTCAAACA 
    CGATAATCCC ATGATAAAAT CCTTGTGTAC TTGGTTTAAG TTGTGACTTG 
    TGAGTACTTT TAGTTTTAGG TGGGAAAGAA ATGAAAACAT TGTGGGCNTG 
    ACNGGTACTA GGTAAGCCCA ATAAGGAAAA CGACTCTACG CAATCAGAGA 
    AGGTCGCCAA GCGTACGGTC GTTCCCTCAT CAAAGAACAA CGTCGCTCGC 
    TTTTTTATTA ATAATAGTTC ACAAATATTA AAACACATTT GGAAAATGAC 
    TTGGTCACGC GCACCCAAAG GCAGTGCAAA ACTAAACGAG CCACCTATCA 
    GTAAAACGTA GCCGTTGATT CGAACCACGT GTATATTGCA CGCACCACAT 
    GCGAGTACGA GTAAGAGAGT TGGTGGTATA TTCACGGCAT ATTATATGTG 
    CACGAATTGA ATCTCTCTAA GCACGAGAGG GCATTTTCGT AACTTTCTTA 
    TAAAAAATCC TACCACGAGT GATTGGGCAA AAAAAACTGA AAGAGGAAAG 
    AGAGAGTTGG ACGGAAAATC TGAAGACCGC CGAGAAAAAT ACTGTTGAAA 
    CGGAACTCTC TTACGTTTTT TCTCANGANA TACGTTTCAT CTTCCTCTCA 
    GTAACTACTC GATTCTNACT CTCTCTCGCC GNCATTGATT CTTCATCAGC 
    TGAAGCCTTG AAGCTCTCTT NTTTTAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 268885 [Map]; Strand: c
      • AT4G00630.2 - [+] show detail - K+ efflux antiporter 2
        Distance: -854; Region: promoter
      • AT4G00630.1 - [+] show detail - K+ efflux antiporter 2
        Distance: -835; Region: promoter
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: -141; Region: promoter
    Flanking Genome Sequence: 15-2121-1 - 3-prime edge 
    TTAAAACGGN AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCA 
    TCACCCCCAT TAGTGCAGGT AGAGTAAGAC AGTAACTTTT GGGTTCATAT 
    TACCGAGCAA GAACCGTTAT TTGTGATTAG ACATGTTATA AACCACTGCT 
    TTAGTGACTA TTTAAAACAA TATATTACAT GTCGTAATCA TGCAACCTAA 
    CTATGTTTTC ATTAATCAAA TACAAAGTCT ACAAGTATGG ACATTAATCT 
    ACAAGTTTAC ATCAATCTGA ACAGCGACGA AGAGAATTAC CGAAGATTGT 
    CGAAACAGAG TCTACAAGTA TGGACATTAC GATCGGTCAA TCTAAGCAGC 
    CTCAATTTTT GAAATCCATA GACGAATTAG CTGCGTTTTC AGTTGCAGTG 
    GAAACATTCA AACGCCAATT CGATGATATT CAGAAGCACA TGCGAGTCAA 
    TCNAAAACGC AATTGATTCC AAACTCGANA GTAACGGCGT TGTCCTNGNC 
    GCGCGGAACA ATAATTTTCC ATCAGCCGAT GTTATCGCCT CCGCGGGAAC 
    AATGTATCTG TNGAAACCAC CGNTNACTGT GAGCCANCCG TCTCAGGANA 
    TTGTACCGGA GACGTCTAAT ANACCGGAGG GGGGGACGTA TNNNTGAATT 
    NGNNGTTTAG CAAANGNCCT GCGTTAANTC CTTATTCCCC GATTTCTTTT 
    GANTCNAGCC TANNTNNTTG GAANGAAGAT TACCNNANNN TTTTGANATT 
    GNGCCANGGN NCCNGCNCNN CTTNGTNNCT GGATGGN

AT4G00630.1

Model type
Protein coding
Short Description
K+ efflux antiporter 2
Curator Summary
member of Putative potassium transporter family
Computational Description
K+ efflux antiporter 2 (KEA2); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153), K+/H+ exchanger (InterPro:IPR004771), NAD(P)-binding domain (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 1 (TAIR:AT1G01790.1); Has 34304 Blast hits to 27699 proteins in 2887 species: Archae - 928; Bacteria - 15112; Metazoa - 9897; Fungi - 1524; Plants - 1371; Viruses - 95; Other Eukaryotes - 5377 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00630.2

Model type
Protein coding
Short Description
K+ efflux antiporter 2
Curator Summary
member of Putative potassium transporter family
Computational Description
K+ efflux antiporter 2 (KEA2); FUNCTIONS IN: potassium:hydrogen antiporter activity, potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, cation transport, metabolic process, transmembrane transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K+/H+ exchanger (InterPro:IPR004771), Cation/H+ exchanger (InterPro:IPR006153), NAD(P)-binding domain (InterPro:IPR016040), Regulator of K+ conductance, N-terminal (InterPro:IPR003148); BEST Arabidopsis thaliana protein match is: K+ efflux antiporter 1 (TAIR:AT1G01790.1).
Link
InterPro Scan - TAIR

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR