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15-2170-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 321334 [Map]; Strand: w
      • AT4G00752.1 - [+] show detail - UBX domain-containing protein
        Distance: -439; Region: promoter
    Flanking Genome Sequence: 15-2170-1 - 5-prime edge 
    CCGGTGACCG TATGCAAAAA TGGAACAAAG ATGCAGTGGG AGATTGTTAC 
    TTCTGTACGA ACTGCCTGGA GTCCAGAGAT CATCTCTTTT TTTCTTGCAG 
    CTATACAGCT GGAATTTGGG AAGCGCTTGC TCGAGGATTG CTTCAGCATC 
    ACTACACAAG TGATTGGCAC CAACTGCTCA ACCTAGTCTC AGCCCATCGC 
    AAGGATAAGG TAACTTGTTT CTTGGTGAAA TACATCTTCC AAACCTCCGT 
    TTATACCATC TGGCATGAGA GGAATCGAAG ACGTCATAAT GAAGCTCCAA 
    AATCTGCTCT CATTCTTATT CAATGGATCG ACAAACAAAT GCGCAACAGA 
    ATCACCACCA TTCAACGCCA CAAGGACCAT CGATATGAGG CCACCTTCCA 
    ACGATGGCTT CAAAGTCGAA GTTAATCGCA AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 321218 [Map]; Strand: w
      • AT4G00752.1 - [+] show detail - UBX domain-containing protein
        Distance: -323; Region: promoter
    Flanking Genome Sequence: 15-2170-1 - 3-prime edge 
    GTCACCGGTA GCAAGTCGAT CATGAGCTGC CAACCAAACC GAGAAGGAGT 
    GTTTCGGCGT TTCATGTGTA AACCATACAC CTCTATGCCA AGCCACGTGT 
    GTTCGAGGTA GTGCGAATAT GATTCCAAGT ATCTTTAGTA GAGAACTTTT 
    CTTTGTTCGA GTTTTTTTTT TTNAATCTTN TNCNGNNTTN GGGAAAANCN 
    TAANGGANCA AAACCANTNT TGANTTTTNC GGAACTCNAA AANTTTTNTC 
    GNGGGGAACA AAAAATTGAA AAANCGNCAA ATCGATANTA ANGNCTANCG 
    TAANTTTTTN TTTTTTTNTT TANCNCAAAA TNGANTTTAA AATTAAANAG 
    GGATTNCNNC CCCGTNGGGG NNACTNNTCN CCGGNGGTTC AAATNANTNN 
    AACTANTNTT AAAAGGGAAA ANNCCGTNGN TTCCNTANTN CCCGGGNAAT 
    NNTTTGNNGT NCNATTTNNC CGGNGGAAAN GGGNANNCCC ANAAAAAACC 
    CTTTCCAATT TTACATNACC NTCANTGGCN CGTCCNANTC ACTCNCGATT 
    CAAAAACTTG AGGGNCCTCC TTTCCTTAAA CCCCCNCTCC CAAACCGGGC 
    CNCCNAGAGG ACGGNANTGG CATTTNCGGN AAATGCCTTN TGCCAAAATG 
    GGCNGGGNGT TCNCCCTAAA AAAAAATGNG GTTGTTCCCN NAAAAAAGGN 
    GAATTGGCNG GNAAAAAATT TNAAANGCCN TTNAAT

AT4G00752.1

Model type
Protein coding
Short Description
UBX domain-containing protein
Computational Description
UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G11740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR