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15-2171-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4530027 [Map]; Strand: c
      • AT1G13250.1 - [+] show detail - galacturonosyltransferase-like 3
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 15-2171-1 - 5-prime edge 
    GGGATAAACT AACAAAATCC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCAC AGACTACACA ACACAGACCT AAAAAAATGT 
    CTTCTCTGCG TTTGCGTTTA TGTCTTCTTC TACTCTTACC TATCACAATT 
    AGCTGCGTCA CAGTCACTCT CACTGACCTC CCCGCGTTTC GTGAAGCTCC 
    GGCGTTTCGA AACGGCAGAG AATGCTCCAA AACGACATGG ATACCTTCGG 
    ATCACGAACA CAACCCATCA ATCATCCACA TCGCTATGAC TCTCGACGCA 
    ATTTACCTCC GTGGCTCAGT CGCCGGCGTC TTCTCCGTTC TCCAACACGC 
    TTCTTGTCCT GAAAACATCG TTTTCCACTT CATCGCCACT CACCGTCGCA 
    GCGCCGATCT CCGCCGCATA ATCTCCTCAA CATTCCCATA CCTAACCTAC 
    CACATTTACC ATTTTGACCC TAACCTCGTC CGCAGCAAAA TATCTTCCTC 
    TATTCGTCGT GCTTTAGACC AACCGTTAAA CTACGCTCGG ATCTACCTCG 
    CCGATCTCCT CCCAATCGCC GTCCGCCGCG TAATCTACTT TGACTCCGAT 
    CTCGTAGTCG TCGATGACGT GGCTAAACTC TGGAGAATCG ATCTACGTCG 
    GCACGTCGTC GGAGCTCCGG AGTACTGTCA CGCGAATTTC ACTAACTACT 
    TCACTTCAAG ATTCTGGGTC GAGTCAAGGT TACAAATCGG CGTTGAAAGA 
    TANGGAAACC GTGTTATTTC AACACCGGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4548073 [Map]; Strand: w
      • AT1G13280.1 - [+] show detail - allene oxide cyclase 4
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 15-2171-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGGTTTTCGA TCACCTTCGT TGAACTCGTA GACGTTAAGC TCTTGGATCT 
    TAGCTGAGAT TTTTCACAAA ATAAAAATCA GTTTTTGTGA AATGGGTACT 
    TGATTTTGAG CTTAAAGGTT GATTCTTTTT TTGTTCTTAT ACCTAATTTG 
    ATGCTAATTT TCTCAAATCA TGAAATGGGT ACTTAGTTGT GAGCATAAAG 
    GTTAACTTTT TACTTACTTG GTCTGGAGTA GTCATTGCTA CTGCTGCTGC 
    AAATGGTTCT GAAGAAACCT CCAGTGGAGG AAGTGGTGGA TCTTGCTCGT 
    GTGGAGAGAC CTGGACTGTT AGATGAGATC CTTTGGTTAT GGAAGGATCT 
    AGAGAAACCG AGAAAAGTGC TTTGGTGAGA TTGATGATTG CGAGAGAGGT 
    TCCTTAGAGT TATCATAGAG ATC

AT1G13250.1

Model type
Protein coding
Short Description
galacturonosyltransferase-like 3
Curator Summary
Encodes a protein with putative galacturonosyltransferase activity.
Computational Description
galacturonosyltransferase-like 3 (GATL3); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 4 (TAIR:AT3G06260.1); Has 2168 Blast hits to 2160 proteins in 496 species: Archae - 2; Bacteria - 1004; Metazoa - 285; Fungi - 17; Plants - 765; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G13280.1

Model type
Protein coding
Short Description
allene oxide cyclase 4
Curator Summary
Encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is reduced during senescence, a process that involves jasmonic acid signalling pathway.
Computational Description
allene oxide cyclase 4 (AOC4); FUNCTIONS IN: allene-oxide cyclase activity; INVOLVED IN: jasmonic acid biosynthetic process; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Allene oxide cyclase (InterPro:IPR009410); BEST Arabidopsis thaliana protein match is: allene oxide cyclase 3 (TAIR:AT3G25780.1); Has 204 Blast hits to 204 proteins in 33 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR