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15-2187-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::semi-sterile)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10149885 [Map]; Strand: c
      • AT3G27420.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 15-2187-1 - 5-prime edge 
    ACGATAACCT TATCGTTGAA ATCTCTGCCA GATGCTATGC AATGATTTCC 
    TACTATTTCA GCGACGCGGT TGAGATTCCT CTCAGGCAGC TCCTTGATTG 
    ATTTCTGAAG CTCCCGAATT TCACCACGAG TCATAGGTCT GTTTTAAAAG 
    AGTTAACAAC TAACACATAA GTAACCACTA ACAAAGAATG CTCTCATAAG 
    GAAAACTCTT TTAACTGATC ATATAATGGC ACAAACTAGA GATCAATTAG 
    ACCACACTAT ACCTGCAAGT CGCCACCACA TCGTCAAGAA GTTTCTCGAG 
    TTCCTGCTGC ATATTGTCAA GCTTTAAAAA AAAAAACNTN TGCAAAAGTT 
    ANCTNTNTTA AANNATGGAT NTTTTTTNTG CAANCTAAAT NTNCTAANGG 
    GGAANATTAN TTNGGACAGC AAAANNTTNN AATNCNGGGA CGTTNTGTTN 
    TTGACCNTNT NNGGGNCAAA CCTNANAAGT NGTNNAATNT NATNTTCCNN 
    ANGGAATTTN GNNAAANCAA ANNGAAANAT TTCCAANTTT TTGTTTCAGN 
    CANNNGGATT AAAANCTTTT ANGTAAAAAA CAAACTNTCN NTCCTCCGGA 
    TTTTTNAGGA ACAAAATCNT TNGGNNACAA NNACTGACAT TTGTTCCCTN 
    NCTGANAAAT CANATCCNGA AAGCGTCCNC TTTCNTGCNT TTGNAAACCA 
    NTNGCAATAA TTTNGAAACC TNTTTCATAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10150001 [Map]; Strand: c
      • AT3G27420.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 15-2187-1 - 3-prime edge 
    GTTATCGTCA ACCTTGATCA GGCGGTAAGA CACAATCCGT AGTTAGTTGA 
    TTCTCTGGTC CCGATAAGTT TTAGTGGAAA GCTAACAGCA TTTCAACCAA 
    ACTGTGTTTT CTTCAGGACA AGGTCATGTT ATGGAGATTG CATTTCTATG 
    TAGGAGCAGT CAAGAGTGCC CAGAAGCTCG CTCCCTAGCT AACTTTGGCT 
    GTATATATAT GGTTTGGGAT GTTAAGATGG TGTGATGGGC TAAACAGGTT 
    TAATATATTT CCTAGTTTTT GTTTTTGTTT TCTTGATTAG TCTGGTTAAG 
    CCGTGTAGTA GTTGGTCTTA CATGGATGGT TAACAAATGA AAATCGGTTC 
    TGATTTTGTA AGACTTTGAT ATGTCAAAGA TTGAGTTGGC CGGTCTGCAG 
    ATTATTTTTG GTGTAGTCCA ATCTCTCTTT TTTTATGTGT ATGCAAAAGT 
    AAACATGGTC TTCAATGTCT TGTCTTCTCT CCTTCGTGAG TAAGATAAGA 
    AGAGCACTGA GTATATAGAT AGTTTTGTTC TTCAATTTTC TGTGATTGAG 
    GACCCTATCG AGTGTTGTTG TATTTGCCAA AGATGATCCC TACGTACTAT 
    TGTATTGTAT AAGTTAAAAA TCGGTTTTCA CGATATAAAA TCTTATATAA 
    AATAAATAGA AATGAACTGT ANATGAAGTG ATAAATATCT TTATAGTATG 
    TAAATCCAAA TTTANACTTT TTTTTTTGTG GGNAAAAAAA ANANG

AT3G27420.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40600.1); Has 43 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR