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15-2203-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 51989 [Map]; Strand: c
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -3639; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 6716; Region: intergenic
    2. Chromosome: 2; Position: 54970 [Map]; Strand: c
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -6620; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 3735; Region: intergenic
    Flanking Genome Sequence: 15-2203-1 - 5-prime edge 
    TTCTTCAACA AGTCGCCTAG CAGCTTTCCT AGCTCAACTT GTCAACAGCT 
    AACATTTTGA GTTCGAGATA GCAACACCCG TCAAGAACAG AATCTCGTAG 
    CACCAAAAAA AAAAAANANG NTNCCANCCG GGGCNGNNNN CCNCNCGGGC 
    CCNTNNAAAN NNNNNNNGGG GGNNGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22579152 [Map]; Strand: c
      • AT3G61020.1 - [+] show detail - pseudogene, similar to P0034A04.28, several hypothetical proteins - Arabidops...
        Distance: 1655; Region: intergenic
      • AT3G61028.2 - [+] show detail - Putative endonuclease or glycosyl hydrolase
        Distance: 2321; Region: intergenic
    2. Chromosome: 2; Position: 4226619 [Map]; Strand: w
      • AT2G10735.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: -113; Region: promoter
    Flanking Genome Sequence: 15-2203-1 - 3-prime edge 
    TTGAAGAACT CCAAGCTGTT GACGAGCTGT TAGGCGGGCA ATAGCAAGCT 
    AGGAAGGCTG CCGACGAGCT GTTAGCTGGG CGAACT

AT2G01034.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT2G01037.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 5.0e-229 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT2G10735.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT3G61020.1

Model type
Pseudogene
Computational Description
pseudogene, similar to P0034A04.28, several hypothetical proteins - Arabidopsis thaliana; blastp match of 43% identity and 2.2e-46 P-value to GP|29837187|dbj|BAC75569.1||AP004333 P0034A04.28 {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR

AT3G61028.2

Model type
Protein coding
Short Description
Putative endonuclease or glycosyl hydrolase
Computational Description
Putative endonuclease or glycosyl hydrolase; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G60940.1).
Link
InterPro Scan - TAIR